Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0874 ATGAATCTCACTATTGTCCTTTCTCAACCATCAGACATTGAGTCTCATACTGTTAACCAAGCCCTAACCGATCCTAAATGGAGACAAGCTATGAATGATGAATTTGATGCTCTTGTTCGAAATGGAACTTGGGAGCTTGTTTCATCTACTTCTATGCAGAATCTTGTTGGATATGAATGCAAGTGCACAGATATTCCCTACACTAAGCAGCAGTTACATGAATTCTTCAAACAACATGACAAAAACGGCAACAATTTGCTGAGCAAGGAAGAGCTGAAAAAGGCCTTCGACGATCTGCAGTCACGTAATCCTGGGTTTAGAGCATGGAGAGCAATGGGCAAAGCTGATGCGGATGGAGATCAGCACATCAGCCAGCAGGAGATGGAGGCTCTTCTGGATTACGCTGTGGGAATAAAATATCAGATCAAGGCATAA 435 0.4276 MNLTIVLSQPSDIESHTVNQALTDPKWRQAMNDEFDALVRNGTWELVSSTSMQNLVGYECKCTDIPYTKQQLHEFFKQHDKNGNNLLSKEELKKAFDDLQSRNPGFRAWRAMGKADADGDQHISQQEMEALLDYAVGIKYQIKA* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0874 144 ProSitePatterns EF-hand calcium-binding domain. 80 92 IPR018247 -
Vvi18g0874 144 Gene3D - 66 135 - -
Vvi18g0874 144 SMART efh_1 107 135 IPR002048 GO:0005509
Vvi18g0874 144 SMART efh_1 71 99 IPR002048 GO:0005509
Vvi18g0874 144 Pfam EF-hand domain 72 97 IPR002048 GO:0005509
Vvi18g0874 144 SUPERFAMILY EF-hand 63 131 IPR011992 -
Vvi18g0874 144 ProSitePatterns EF-hand calcium-binding domain. 116 128 IPR018247 -
Vvi18g0874 144 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0874 Vvi-Chr18 8948470 8950471 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0874 - - vvi:100853574 160.614