Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0869 ATGCCTCTGTGGACTCCGATTACCAGAGACATAAGTCTCCCCCTGTCCGAAGACCAGCTCAAGGGTCTTCTCAAGAGATATGACACCAACAAGGATGGCCGGCTAAGCAAGGATGAGCTGAAGAAGGCTTTCCGAGGGATGGGCTTGCATTTCAGTGGGTGGAGAGCTGGACGAGCGCTCCGTCATGCTGATGCTAATGGAGACCATTTCATTAGCGAGGATGAGCTGAACGAGCTCGTCAAATATGCGCATAGTAAATGGGGATTTAAGTTACGTTAG 279 0.5054 MPLWTPITRDISLPLSEDQLKGLLKRYDTNKDGRLSKDELKKAFRGMGLHFSGWRAGRALRHADANGDHFISEDELNELVKYAHSKWGFKLR* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0869 92 ProSitePatterns EF-hand calcium-binding domain. 64 76 IPR018247 -
Vvi18g0869 92 ProSiteProfiles EF-hand calcium-binding domain profile. 15 50 IPR002048 GO:0005509
Vvi18g0869 92 ProSitePatterns EF-hand calcium-binding domain. 28 40 IPR018247 -
Vvi18g0869 92 SMART efh_1 55 83 IPR002048 GO:0005509
Vvi18g0869 92 SMART efh_1 19 47 IPR002048 GO:0005509
Vvi18g0869 92 CDD EFh 19 81 IPR002048 GO:0005509
Vvi18g0869 92 SUPERFAMILY EF-hand 14 81 IPR011992 -
Vvi18g0869 92 Gene3D - 7 87 - -
Vvi18g0869 92 ProSiteProfiles EF-hand calcium-binding domain profile. 58 86 IPR002048 GO:0005509
Vvi18g0869 92 Pfam EF-hand domain 23 46 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0869 Vvi-Chr18 8902356 8902634 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0869 5 85 EF-hand Containing Proteins AT1G18210 32.099 2.96e-10 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0869 - - qsu:111997656 129.413