Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01817 ATGAACAAGCTTTGGTCTTACAATCAGACTCACAAACCAAAGGAGGCTGGAATGGGACAAAACATGAGAGTGGTGAAGATGGCCGCAATATGTGTGATTGAAAAAATATCTGGCTTTTGGGATGATGTTAAAGGGACACAGAGTGGAGAAGAGATGGAGAAATTTGTGTGTACAAGTGAAGTTGTGATTGAAGTTTGGGAAGGAGGGTGTGTACGGGTCTATGGTCAAGGAATCTATACATGGAAGTGTGAAGATGGGAAGGAAGTCCCATCGAATAACATTTTATTTAAAGGGTACAATTTGTCATTGTATCTCGCGTTCGACAAAGCCACTACCTCAACCGTTCGCATAGATTCGCTGTGGTCGAAAAATCTGCGTGCATTCAGGGAAACATTGCAGTTCAAGCACGTGTCATTGATATTGACTTGGAAACCTGGCATGGGAGTTGTTACTGTTTCTACCTCAGCTTCTAGGACTCCATTAAGATTTAGTACAAAGTTGATCAGTCGGCAGCAGGCACATAAACGACCCCTAATTGTAGCTTTTAAAAGAAATAAATCGAGTAAAACCACTTTGGTTTCACCTCAGGAGAAAATTCCCCTACCTGTAGAAACGGCAAAGAAACACCAGAAAAAGATAGGAAAGACTAATGAGTCGCTGAAGAGAGTGAGAGCTGTCTCTACTGATGAAACCCCTCCAGTCACCTTGGATGTGGACTACAATGAAGCTGCAGCCAAACTTGAAAATATATATAAACTCAGCTCTGCAGCTGATACTTGTAACGCAGAAGATATAGAAAGTAAAATCAAGAGAGTATTGCGGGGAAGGAAGAAAGTTGGTGATGAACATGATCACAGAAATGATGATAATGTGGTTAGAAACCAGAATAAAAAGGCCAAACGATTGAGTCTCGATAAGAGGATTGCATTGAAAAGGAATGCAAAAGAGGAGGTGATTGTTCAAGCCCAGAAGAAAAAAGCTGTTAATAGAATAGAGAATATTGATGCGCTTATCAGGGAATATTCAGCATCAACTGATTTAGTTAGCATGGATTGGAAGAAAATGAAAATTCCGCCAGTTCTTCCTTCTTCAGAACATGCATGGCTATTTAAGTTGATGGAACCTATGAAGGCACTCCTACAAGTGAGAGAAGATTTACAGGCAGCAGGGAAAGAAATTACAGATGGTGAACTAGCAGATGCAACAAGCATTAGCATTGTTCAAGTAAGGAAAGCTATGGAGGTTGGTCAAGCTGCGAGAACCAAGCTCATAAAGCACAATCTCCGGCTTGTATTGTTCGTAATTAACAAATATTTTCAAGATTTTGCAAGTGGCCCAAGGTTTCAAGATCTTTGTCAGGCTGGAGTTAGGGGACTCATCACAGCAATTGATCGATTTGAGTCAAAAAGGCGACTTCAGCTATCTACATACAGTCTATTTTGGATAAGACATTCAATTGTTCGTTCCATAACCCTCTCAAGCTTCACACGTGTTCCTTTTGGACTTGACCGGGTTAGGTCAGATATCCATAGAACAAAACTTGAGTTGGCATTTGAGCTCCAGAGGTCACCAACGGAAGACGAGGTAGTAGAAAGAATTGGGATTTCCCCTGAAAGATATTATGACGTAATGAAGGCATCGAAACCCATTCTATCCCTTCATTCAAGACATATAACCACAGATGAAGAGTTTATTAATGGGATTACTGATGTTGATGGTGTTAATGGTGATAATAGAAGGCAACTGGCTGTGTTAAGACTTGCTCTGGATGATGTGCTTGATTCCCTGAAGCCAAAGGAGAGTTTAGTGATCAGACAGAGATATGGACTTGATGGCAAGGGTGACAGAACATTGGGAGAAATTGCTGGGAACTTGAACATTTCGAGGGAAATGGTTCGGAAGCATGAAGTCAAGGCTCTCATGAAGCTCAAGCATCCTGCACGTTTGGATTATCTTCGTCGCTATGTTGTATAA 1974 0.4113 MNKLWSYNQTHKPKEAGMGQNMRVVKMAAICVIEKISGFWDDVKGTQSGEEMEKFVCTSEVVIEVWEGGCVRVYGQGIYTWKCEDGKEVPSNNILFKGYNLSLYLAFDKATTSTVRIDSLWSKNLRAFRETLQFKHVSLILTWKPGMGVVTVSTSASRTPLRFSTKLISRQQAHKRPLIVAFKRNKSSKTTLVSPQEKIPLPVETAKKHQKKIGKTNESLKRVRAVSTDETPPVTLDVDYNEAAAKLENIYKLSSAADTCNAEDIESKIKRVLRGRKKVGDEHDHRNDDNVVRNQNKKAKRLSLDKRIALKRNAKEEVIVQAQKKKAVNRIENIDALIREYSASTDLVSMDWKKMKIPPVLPSSEHAWLFKLMEPMKALLQVREDLQAAGKEITDGELADATSISIVQVRKAMEVGQAARTKLIKHNLRLVLFVINKYFQDFASGPRFQDLCQAGVRGLITAIDRFESKRRLQLSTYSLFWIRHSIVRSITLSSFTRVPFGLDRVRSDIHRTKLELAFELQRSPTEDEVVERIGISPERYYDVMKASKPILSLHSRHITTDEEFINGITDVDGVNGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARLDYLRRYVV 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01817 657 Gene3D - 580 657 IPR036388 -
Spst8g01817 657 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 235 490 IPR013325 GO:0003700|GO:0006352|GO:0006355
Spst8g01817 657 Pfam Sigma-70 region 3 507 574 IPR007624 GO:0003700|GO:0006352|GO:0006355
Spst8g01817 657 PRINTS Major sigma-70 factor signature 617 632 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst8g01817 657 PRINTS Major sigma-70 factor signature 632 643 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst8g01817 657 PRINTS Major sigma-70 factor signature 474 482 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst8g01817 657 PRINTS Major sigma-70 factor signature 596 608 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst8g01817 657 PRINTS Major sigma-70 factor signature 450 463 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst8g01817 657 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 237 656 - -
Spst8g01817 657 NCBIfam sigma-70 family RNA polymerase sigma factor 419 645 IPR014284 GO:0003700|GO:0006352|GO:0006355
Spst8g01817 657 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 498 562 IPR013324 -
Spst8g01817 657 Gene3D - 497 548 IPR036388 -
Spst8g01817 657 Pfam Sigma-70 region 2 423 490 IPR007627 GO:0003700|GO:0006352|GO:0006355
Spst8g01817 657 Gene3D RNA Polymerase Primary Sigma Factor 233 496 - -
Spst8g01817 657 Pfam Sigma-70, region 4 592 645 IPR007630 GO:0003700|GO:0006352|GO:0006355
Spst8g01817 657 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 561 652 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01817 Spst-Chr8 22007607 22018311 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01817 K03093 - gmx:100796580 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01432 9 14313964 14316222 Spst8g01817 8 22007607 22018311 PCT