Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0631 ATGGGAGTTGTTACTGTTTCTACCTCAGCTGCTAGGACTCCCTTAAGATTGAGTACAAAGTTGATCAGTCTTCAGCAGGCACATAAACGACTCTTAATTGTAGCTTTTAAAGGAAATAAATTGAATAAAACCACTTTGGTTTCACCTAAGGAGCAAATTCCTCTACCCTTAGAAACGGCAAAGAAACACCGGAAAAGGATAGGAAAGACTAATGATTCGGTGAAGAGAGTGAGAGCTGTCTCTACTGATGAAACCACACCATTCACCTTGGATGTGGACTACAATGAAGCTGCAGCCAAACTTGAAAATATATATAAACTCAGCTCTGTATCTAGTACTTGTGACACGGAAGATATAGATAGTAAAACCAAGAGAGTATTGCGGAGGAGGAAGAACGTTGGTGATGAACATGATGACAGAAATGATGGTAGTGTGGTTAGAAACCAGAATAAGAAGGCCAAACGATTGAGTCTTGATAAGAGGATTGCATTGAAAAGGAATCCAAAGCAGGAGGTGATTGTTCAAGCTCAGAAGAAAAGAGATGTTAATAGAATAGAGAATATTGATGCGCTTATCAGGGAATATTCAGCATCAACTGATTTAGTTAGCATGGACTGGAAGAAAATCAAAATTCCGCCAGTTCTTCCTTCTTCAGAACATGCATGGTTATTTAAGTTGATGGAACCTATGAAGGAACTCCTACAAGTGAGAGAAGATTTACAGGAAGTAGGGAAAGAAATTTCAGATGGTGAACTAGCAGATGCAAACAGCATTAGCGTTATTCAAGTAAGGAAAGCTCTAGAGGTTGGTCAAGCTGCGAGAAACAAGCTCATAAAGCACAATCTCCGGCTTGTATTGTTCGTGATTAACAAATATTTTCAAGATTTTGCAAGTGGTCCAAGGTTTCAAGATCTTTGTCAGGCTGGAGTTAAGGGACTTATCACTGCAATTGATCGATTTGAGTCAAAAAGGAGACTTCAGCTATCTACATACAGTCTATTTTGGATTAGACATTCAATTGTTCGTTCCATAACCCTCTCAAGCCTCACACGTGTTCCTTTTGGACTTGACAGGGTTAGAGCAGATATCCATAGAGCAAAACTTGAGTTAAGATTTGAGCTCCAGAGGTCACCAACGGAAAAAGAGGTAGTGGAAAGAATTGGGATCTCCCCTGAAAGATATTATGATGTATTGAAGGCATCAAAACCCATTATATCCCTTCATTCAAGACATATAGTGACGCAAGAAGAGTTTATTAATGGGATTACTGATCTTGATGGTGTGGATGGTGATAATAGGAGGCAACTTGCTGTTCTAAGACTTGCTCTTGATGATGTGCTTGATTCCTTGAAGCCAAAGGAAAGCTTAGTGATGAGACAGAGATATGGACTTGATGGGAAGGGTGACAGAACGTTGGGAGAAATCGCTGGGAATTTGAATATTTCGAGGGAAATGGTTCGGAAGCATGAAGTTAAGGCTCTCATGAAGCTGAAGCACCCTGCTCGGTTGGATTATCTCCGTCGCTATGTTGTATAA 1536 0.401 MGVVTVSTSAARTPLRLSTKLISLQQAHKRLLIVAFKGNKLNKTTLVSPKEQIPLPLETAKKHRKRIGKTNDSVKRVRAVSTDETTPFTLDVDYNEAAAKLENIYKLSSVSSTCDTEDIDSKTKRVLRRRKNVGDEHDDRNDGSVVRNQNKKAKRLSLDKRIALKRNPKQEVIVQAQKKRDVNRIENIDALIREYSASTDLVSMDWKKIKIPPVLPSSEHAWLFKLMEPMKELLQVREDLQEVGKEISDGELADANSISVIQVRKALEVGQAARNKLIKHNLRLVLFVINKYFQDFASGPRFQDLCQAGVKGLITAIDRFESKRRLQLSTYSLFWIRHSIVRSITLSSLTRVPFGLDRVRADIHRAKLELRFELQRSPTEKEVVERIGISPERYYDVLKASKPIISLHSRHIVTQEEFINGITDLDGVDGDNRRQLAVLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARLDYLRRYVV* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0631 511 Pfam Sigma-70 region 3 362 427 IPR007624 GO:0003700|GO:0006352|GO:0006355
Pvu1g0631 511 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 86 344 IPR013325 GO:0003700|GO:0006352|GO:0006355
Pvu1g0631 511 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 511 - -
Pvu1g0631 511 Pfam Sigma-70 region 2 277 344 IPR007627 GO:0003700|GO:0006352|GO:0006355
Pvu1g0631 511 Pfam Sigma-70, region 4 446 499 IPR007630 GO:0003700|GO:0006352|GO:0006355
Pvu1g0631 511 Gene3D - 351 402 IPR036388 -
Pvu1g0631 511 MobiDBLite consensus disorder prediction 127 158 - -
Pvu1g0631 511 Gene3D - 434 511 IPR036388 -
Pvu1g0631 511 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 352 409 IPR013324 -
Pvu1g0631 511 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 273 499 IPR014284 GO:0003700|GO:0006352|GO:0006355
Pvu1g0631 511 Gene3D RNA Polymerase Primary Sigma Factor 57 350 - -
Pvu1g0631 511 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 438 509 IPR013324 -
Pvu1g0631 511 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 511 - -
Pvu1g0631 511 PRINTS Major sigma-70 factor signature 304 317 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu1g0631 511 PRINTS Major sigma-70 factor signature 328 336 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu1g0631 511 PRINTS Major sigma-70 factor signature 450 462 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu1g0631 511 PRINTS Major sigma-70 factor signature 471 486 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu1g0631 511 PRINTS Major sigma-70 factor signature 486 497 IPR000943 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0631 Pvu-Chr1 7535226 7540023 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0631 K03093 - gmx:100796580 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0631 1 7535226 7540023 Pvu9g1422 9 20199460 20201746 PCT
Pvu9g1423 9 20204300 20204642 Pvu1g0631 1 7535226 7540023 PCT