Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00717 ATGGGAGTTGTTACTGTTTCTACCTCAGCTGCTAGGACTCCATTAAGATTGAGTACAAAGTTGATCAGTCTTCAGCAGGCACATAAACGACTCTTAATTGTAGCTTTTAAAGGAAATAAATTGAATAAAACCACTTTGGTTTCACCTAAGGAGCAAACTCCTCTACCCTTAGAAACGGCAAAGAAACACCGGAAAAGGATAGGAAAGAATAATGATTCGGTGAAGAGAGTGAGAGCTGTCTCTACTGATGAAACCTCACCATTCACCTTGGATGTGGACTACAATGAAGCTGCAGCCAAACTTGAAAATATATATAAACTCAGCTCTGTATCTGGTACTTGTGACACGGAAGATATAGATAGTAAAACCAAGAGAGTATTGCGGAGGAGGAAGAACGTTGGTGATGAACATGATGATAGAAATGATGGTAGTGTGGTTAGAAACCAGAATAAGAAGGCCAAACGATTGAGTCTTGATAAGAGGATTGCATTGAAAAGGAATGCAAAGCAGGAGGTGATTGTTCAAGCTCAGAAGAAAAGAGATGTTAATAGAATAGAGAATGTTGATGCGCTTATCAGGGAATATTCAGCTTCAACTGATTTAGTTAGCATGGACTGGAAGAAAATCAAAATTCCCCCAGTTCTTCCTTCTTCAGAACATGCATGGTTATTTAAGTTGATGGAACCTATGAAGGAACTCCTACAAGTGAGAGAAGATTTACAGGAAGTAGGGAAAGAAATTTCAGATGGTGAACTAGCAGATGCAAACAACATTAGCGTTATTCAAGTAAGGAAAGCTCTAGAGGTTGGTCAAGCTGCGAGAAACAAGCTCATAAAGCACAATCTCCGGCTTGTATTGTTCGTGATTAACAAATATTTTCAAGATTTTGCAAGTGGTCCAAGGTTTCAAGATCTTTGTCAGGCTGGAGTTAAGGGACTTATCACTGCAATTGATAGATTTGAGTCAAAAAGGAGACTTCAGCTATCTACATACAGTCTATTTTGGATTAGACATTCAATTGTTCGTTCCATAACCCTCTCAAGCTTCACACGTGTTCCTTTTGGACTTGACAGGGTTAGAGCACATATCCATAGAGCAAAACTTGAGTTAAGATTTGAGCTCCAGAGGTCACCAACGGAAGAAGAGGTAGTGGAAAGAATTGGGATCTCCCCTGAAAAATATTATGATGTATTAAAGGCATCAAAACCCATTCTATCCCTTCATTCAAGACATATAATGACTCAAGAAGAGTTTATTAATGGGATTACTGATCTTGATGGTGTGGATGCTGATAATAGGAGGCAACTTGCTGTTCTAAGACTTGCTCTTGATGATGTGCTTGATTCCTTGAAGCCGAAGGAAAGCTTAGTGATGAGACAGAGATACGGACTTGATGGGAAGGGTGACAGAACATTGGGAGAAATCGCTGGAAATTTGAATATTTCGAGGGAAATGGTTCGGAAGCATGAAGTTAAGGCTCTCATGAAGCTTAAGCACCCTTCTCGGTTGGATTATCTCCGTCGCTATGTTGTATAA 1536 0.3965 MGVVTVSTSAARTPLRLSTKLISLQQAHKRLLIVAFKGNKLNKTTLVSPKEQTPLPLETAKKHRKRIGKNNDSVKRVRAVSTDETSPFTLDVDYNEAAAKLENIYKLSSVSGTCDTEDIDSKTKRVLRRRKNVGDEHDDRNDGSVVRNQNKKAKRLSLDKRIALKRNAKQEVIVQAQKKRDVNRIENVDALIREYSASTDLVSMDWKKIKIPPVLPSSEHAWLFKLMEPMKELLQVREDLQEVGKEISDGELADANNISVIQVRKALEVGQAARNKLIKHNLRLVLFVINKYFQDFASGPRFQDLCQAGVKGLITAIDRFESKRRLQLSTYSLFWIRHSIVRSITLSSFTRVPFGLDRVRAHIHRAKLELRFELQRSPTEEEVVERIGISPEKYYDVLKASKPILSLHSRHIMTQEEFINGITDLDGVDADNRRQLAVLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPSRLDYLRRYVV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00717 511 Gene3D - 351 402 IPR036388 -
Phco2g00717 511 MobiDBLite consensus disorder prediction 128 153 - -
Phco2g00717 511 Gene3D - 434 511 IPR036388 -
Phco2g00717 511 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 91 510 - -
Phco2g00717 511 PRINTS Major sigma-70 factor signature 328 336 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco2g00717 511 PRINTS Major sigma-70 factor signature 450 462 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco2g00717 511 PRINTS Major sigma-70 factor signature 486 497 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco2g00717 511 PRINTS Major sigma-70 factor signature 304 317 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco2g00717 511 PRINTS Major sigma-70 factor signature 471 486 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco2g00717 511 Pfam Sigma-70 region 3 362 430 IPR007624 GO:0003700|GO:0006352|GO:0006355
Phco2g00717 511 NCBIfam sigma-70 family RNA polymerase sigma factor 273 499 IPR014284 GO:0003700|GO:0006352|GO:0006355
Phco2g00717 511 Pfam Sigma-70 region 2 277 344 IPR007627 GO:0003700|GO:0006352|GO:0006355
Phco2g00717 511 Pfam Sigma-70, region 4 446 499 IPR007630 GO:0003700|GO:0006352|GO:0006355
Phco2g00717 511 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 352 410 IPR013324 -
Phco2g00717 511 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 438 509 IPR013324 -
Phco2g00717 511 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 92 344 IPR013325 GO:0003700|GO:0006352|GO:0006355
Phco2g00717 511 Gene3D RNA Polymerase Primary Sigma Factor 65 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00717 Phco-Chr2 7482336 7486187 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01390 7 12698571 12701396 Phco2g00717 2 7482336 7486187 PCT