Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3493 ATGGCCACGCTTCAAGCTTCTCTTCTCTCTAAACCTTCCCTCCCATTCCCATTCTCATCTTCATACCCTTCACTTCGCCGCAACACAATTCTCTCTTTCCACTCCCTCACCTCATCCCATCCCCACCTCTCGCGCCTCCGCTCCCGTGTCCCCTGCACATTCCGCCCCGACAACAGCATTACCTCCTCTTCCGAACCCCAACCCAAACCCCAACCTCAATCCCAATTAACTAACTCCGAACCAGATTCCGCCGAACCTGATGCCGTTGACACCGGCGAGGTTCCAAATTCAAATTCAACGGAGGAAAAGATTGCAGTTTCGGATTGGAATGAGTCAAGTTTGGAACTTAGTTCCGAGAGTGTAGTGTCTGGCAGCGAGAGTGAGGGGAAGAGTGCGAATCTGAAGAAGAAGAAAGATGAGGAGGGTGTTGGTGTTGGTTCCAGGTTGCCATTTTTGGTGTTTCTTCTTGGAATTTGGGTGAAAGTGAGAGAAGCGGTGAGAAGGGCATTTTCGGAATTTTTTGATTGGTGGCCGTTTTGGCGTCAGGAGAAGCGGCTGGCGAAGTTGATCGCCGAGGCCGAGGCAAACCCGCAGGATGCCGAGAAGCAGAGTGCTCTGTTTGTTGAGCTCAACAAGCACAGTCCTGAGTCTGTCATCAAGCGATTCGAACAAAGGGATTGTGCTGTAGACAGTAGAGGAGTCGCAGAATATCTTCGAGCTCTTGTAATGACTAATGCTATCACCGAATATCTTCCAGATGAGGAAATTGGAAAGCCTTCTAGTCTTCCTACTCTGTTGCAAGAGTTAAAGCAGCGTGCATCAGGCAATGTAGATGAGACTTTTCTTAGCCCTGGAATATCTGAGAAGCAGCCATTACATGTGATAATGGTTGATCCAAAAACTTCAAACAAATCACGTTTTGCTCAAGAGCTCATTTCGACTATTTTGTTTACTGTTGCAGTGGGATTGGTCTGGTTTATGGGTGCTGCTGCACTTCAAAAATACATAGGAAGCTTGGGTGGCATTGGAACATCAGGTGTTGGGTCAAGTTCTTCCTATGCCCCAAAGGAGCTAAACAAAGAAGTTACGCCTGAAAAGAATGTCAAGACATTCAAGGATGTGAAAGGTTGTGATGATGCAAAGCAAGAACTTGAGGAGGTTGTGGAGTACTTAAAAAATCCCACCAAGTTTACACGCCTTGGAGGAAAGCTGCCTAAGGGTATTCTCTTGACAGGGGCACCAGGAACCGGAAAAACTCTTCTTGCCAAGGCTATAGCTGGAGAAGCCGGTGTGCCGTTTTTCTATCGGGCAGGGTCTGAATTTGAGGAGATGTTTGTTGGAGTTGGTGCTCGACGTGTAAGATCTTTGTTTCAAGCAGCTAAGAAAAAGGCTCCTTGTATCATTTTCATTGATGAAATTGATGCTGTTGGATCAACAAGGAAACAGTGGGAGGGTCATACTAAGAAGACATTGCATCAGTTACTTGTTGAAATGGATGGGTTTGAGCAGAATGAGGGAATAATATTAATGGCAGCAACAAACTTGCCTGATATTCTTGATCCAGCTTTAACAAGACCCGGTAGATTTGATCGCCATATTGTTGTACCAAATCCAGATGTACGTGGTCGGCAAGAAATATTGGAGCTCTACCTACAAGATAAACCTCTGGCTGATGATGTAGATGTTAAAGCGATAGCCCGTGGTACCCCAGGATTCAATGGGGCAGATCTTGCAAACCTGGTAAACATTGCTGCCATTAAAGCTGCGGTTGAAGGTGCAGAGAAACTAACAGCTGGACAATTGGAATTTGCAAAAGACAGAATAATCATGGGTACAGAGAGGAAAACAATGTTTATATCAGATGAGTCTAAAAAGCTCACTGCTTATCATGAGAGTGGCCATGCAATCGTCGCCCTTAACACTGATGGTGCACATCCTATCCACAAGGCAACAATCATGCCCCGCGGCTCTGCTTTAGGGATGGTTACGCAGCTTCCATCAAGTGATGAGACATCAATTAGCAAGAAACAGTTGTTAGCTCGCCTTGATGTATGTATGGGAGGAAGAGTTGCAGAAGAGCTTATATTTGGTCATGATTATGTCACAACTGGAGCAAGTAGTGATCTTCACACAGCTACTGAACTTGCCCAATATATGGTTTCAAATTGTGGGATGAGTGATGCAATTGGACCAATTCATATAAAAGAGCGGCCAAGTTCTGAAATGCAGTCGCGTATAGATGCAGAGGTTGTAAGACTTCTTAGAGAAGCATATGATCGTGTGAAAGCCCTTTTGCGGAAGCATGAGAAGGCATTGCATGCGCTGGCAAATGCATTACTCGAGTACGAGACACTGACTTCAGAAGAAATCCGGCGAATACTTCTACCATACCAGGAAGGAAGACTATCAGAACAACAGGAACAAGAAGCAGCAGAGGGGGACCTTGTACTGGTGTAA 2457 0.4571 MATLQASLLSKPSLPFPFSSSYPSLRRNTILSFHSLTSSHPHLSRLRSRVPCTFRPDNSITSSSEPQPKPQPQSQLTNSEPDSAEPDAVDTGEVPNSNSTEEKIAVSDWNESSLELSSESVVSGSESEGKSANLKKKKDEEGVGVGSRLPFLVFLLGIWVKVREAVRRAFSEFFDWWPFWRQEKRLAKLIAEAEANPQDAEKQSALFVELNKHSPESVIKRFEQRDCAVDSRGVAEYLRALVMTNAITEYLPDEEIGKPSSLPTLLQELKQRASGNVDETFLSPGISEKQPLHVIMVDPKTSNKSRFAQELISTILFTVAVGLVWFMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVTPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPTKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVEGAEKLTAGQLEFAKDRIIMGTERKTMFISDESKKLTAYHESGHAIVALNTDGAHPIHKATIMPRGSALGMVTQLPSSDETSISKKQLLARLDVCMGGRVAEELIFGHDYVTTGASSDLHTATELAQYMVSNCGMSDAIGPIHIKERPSSEMQSRIDAEVVRLLREAYDRVKALLRKHEKALHALANALLEYETLTSEEIRRILLPYQEGRLSEQQEQEAAEGDLVLV* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3493 818 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 2 801 IPR005936 GO:0004176|GO:0004222|GO:0016020
Amo16g3493 818 Coils Coil 751 785 - -
Amo16g3493 818 Gene3D - 538 611 - -
Amo16g3493 818 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE YME1L1 144 799 - -
Amo16g3493 818 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 318 794 IPR005936 GO:0004176|GO:0004222|GO:0016020
Amo16g3493 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 634 IPR027417 -
Amo16g3493 818 PANTHER METALLOPROTEASE M41 FTSH 144 799 - -
Amo16g3493 818 MobiDBLite consensus disorder prediction 54 84 - -
Amo16g3493 818 ProSitePatterns AAA-protein family signature. 507 525 IPR003960 GO:0005524|GO:0016887
Amo16g3493 818 CDD AAA 382 536 - -
Amo16g3493 818 MobiDBLite consensus disorder prediction 42 139 - -
Amo16g3493 818 SUPERFAMILY FtsH protease domain-like 619 797 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Amo16g3493 818 SMART AAA_5 404 539 IPR003593 -
Amo16g3493 818 MobiDBLite consensus disorder prediction 92 129 - -
Amo16g3493 818 Pfam AAA+ lid domain 559 597 IPR041569 -
Amo16g3493 818 Gene3D Peptidase M41 612 800 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Amo16g3493 818 Pfam ATPase family associated with various cellular activities (AAA) 408 536 IPR003959 GO:0005524|GO:0016887
Amo16g3493 818 Pfam Peptidase family M41 618 793 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Amo16g3493 818 Gene3D - 348 537 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3493 Amo-Chr16 144346881 144356945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3493 2 817 Miscellaneous Gene Families AT5G53170 73.309 0.0 1155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3493 K08955 - gmx:100794322 1220.68