Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1467 ATGGCCACTCTTCAAGCTTCCCTTCTCTCCAAACCTTCCCTTCCCTTTCCATTCCCATTCCCATTCTCCTGCCTCTCTCCGAGCCACTCTCCATTCTCCCTCTCCTTCCACTCCACGCGCCGCCTTTCCTCCACGCTCCTCTGCTGCACCTTTCGCTCAGACAGCGTCGGTTCCCGCTCCGAACCCAATCACAACCCCTCCGAAACCGGTTCGGCCAACGCGGAACCGGACCCCAGCGCGGGTATAATTTATTCGACGGAAGAAGGTGCAGTTCAGGTTTCTGATTCGGACGAGGCGAGTTTGGAAGGTGGAGAGACTGTGCTGGGGAGTGGCGCTGGTTTGGAGAGGGAAGGAAATATTGCGAATGGAAGGTTTTCGATAGTGGTGTTATTTGTGGGACTGTGGGTGAAGGCGAGGGAGCGTGTGAAGAAGGCTTTCGCGGAGTTTCTTGATTGGTGGCCATTTTGGCGCCAGGAGAAGCGTGTCGAGCGGTTGATTGCGGAAGCCGACGCGAATCCTCAAGATGCTGCTAAACAGAGTGCTCTGTTTGTGGAACTCAATAAGCACAGTCCTGAATCTGTCATCAAGCGGTTTGAACAAAGGGATCGAGCTGTGGACAGTAGAGGGGTTGCGGAATACCTTCGAGCTCTTGTGATTACTAATGCTATTAGTGAATATCTTCCAGATGAGGATTCTGGAAAAACTTCTAGCCTTCCTATACTGTTGCAAGAGTTGAAGCAGCGTGCATTGGGTAACTCAGATGAAACTTTTCTTAATCCTGGAATATCCGAGAAGCAGCCATTGCATGTGGTTATGGTTGATCCAAAAGTATCAAATAAATCACGTTTTGCACAAGAGCTTATCTCGACTATTTTGTTTACCATAGCTGTGGGTTTGGTCTGGTTTATGGGTGCTGCTGCACTTCAAAAATACATAGGAAGCTTGGGGGGGATTGGACCTTCAGGAGTTGGATCAGGTTCTTCCTATGCCCCAAAGGAGCTAAATAAGGAAGTGATGCCTGAAAAGAATGTAAAAACCTTTAAGGATGTGAAAGGTTGTGATGATGCAAAACAAGAACTTGAGGAAGTTGTGGAGTACCTAAAAAATCCATCTAAGTTTACACGCCTTGGAGGAAAGTTGCCAAAGGGGATTCTTTTGACAGGAGCACCTGGAACTGGAAAAACTCTTCTAGCGAAGGCTATTGCTGGAGAAGCTGGTGTTCCATTTTTCTATCGGGCAGGCTCTGAATTTGAGGAGATGTTTGTTGGAGTTGGTGCTCGACGTGTAAGATCCTTGTTTCAAGCCGCAAAAAAGAAGGCACCTTGTATCATTTTCATCGATGAAATTGATGCTGTGGGATCAACAAGAAAACAATGGGAGGGCCACACTAAGAAGACATTACATCAACTACTTGTCGAAATGGATGGGTTTGAGCAGAATGAGGGAATAATATTAATGGCAGCAACAAACTTGCCTGATATTCTTGATCCAGCTTTAACGAGACCTGGCAGATTCGATCGACATATTGTTGTACCAAACCCAGATGTACGAGGTCGGCAAGAAATATTGGAACTCTATCTGCAAGATAAGCCTATAGCTGATGATGTAGATGTTAAAGCAATTGCTCGTGGTACCCCAGGGTTCAATGGAGCAGATCTTGCGAACTTGGTAAATGTTGCTGCCATTAAAGCTGCAGTTGAAGGTGCAGAGAAAGTAACAGCTGCACAGTTGGAGTTTGCAAAAGATAGAATAATTATGGGTACTGAGCGGAAAACAATGTTTATATCTGAAGAGTCAAAAAAGCTCACTGCCTATCATGAGAGTGGCCATGCAATTGTTGCCCTTAACACTGATGGTGCACATCCAATTCACAAGGCAACAATCATGCCACGTGGATCTGCTTTAGGAATGGTCACTCAGCTTCCCTCAAGTGATGAGACATCAATAAGCAAGAAACAGTTGTTAGCTCGCCTTGATGTTTGTATGGGAGGAAGAGTTGCAGAAGAGCTTATCTTTGGCCGGGATTATGTCACAACTGGAGCAAGTAGTGACCTCCACACTGCTACTGAGCTTGCCCAATACATGGTATCAAATTGTGGGATGAGTGATGCAATTGGGCCAGTTCATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGGTTGTGAAACTCCTTCGGGAGGCATATGATCGTGTTAAAGCCCTTCTAAAAAAGCATGAGAAGGCATTACATGTGTTGGCACACGCTTTACTAGAGTATGAGACACTTAGTGCAGAAGAAATCAGGCGAATACTTCTCCCATATCGGGAAGGACGGCTATCAGAACAACAGGAACAAGAAGTAGCAGAAGGGGATCTTGTGTTAGTGTAA 2385 0.46 MATLQASLLSKPSLPFPFPFPFSCLSPSHSPFSLSFHSTRRLSSTLLCCTFRSDSVGSRSEPNHNPSETGSANAEPDPSAGIIYSTEEGAVQVSDSDEASLEGGETVLGSGAGLEREGNIANGRFSIVVLFVGLWVKARERVKKAFAEFLDWWPFWRQEKRVERLIAEADANPQDAAKQSALFVELNKHSPESVIKRFEQRDRAVDSRGVAEYLRALVITNAISEYLPDEDSGKTSSLPILLQELKQRALGNSDETFLNPGISEKQPLHVVMVDPKVSNKSRFAQELISTILFTIAVGLVWFMGAAALQKYIGSLGGIGPSGVGSGSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPIADDVDVKAIARGTPGFNGADLANLVNVAAIKAAVEGAEKVTAAQLEFAKDRIIMGTERKTMFISEESKKLTAYHESGHAIVALNTDGAHPIHKATIMPRGSALGMVTQLPSSDETSISKKQLLARLDVCMGGRVAEELIFGRDYVTTGASSDLHTATELAQYMVSNCGMSDAIGPVHIKERPSSEMQSRIDAEVVKLLREAYDRVKALLKKHEKALHVLAHALLEYETLSAEEIRRILLPYREGRLSEQQEQEVAEGDLVLV* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1467 794 PANTHER METALLOPROTEASE M41 FTSH 120 775 - -
Vra6g1467 794 MobiDBLite consensus disorder prediction 54 81 - -
Vra6g1467 794 Pfam Peptidase family M41 594 769 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vra6g1467 794 ProSitePatterns AAA-protein family signature. 483 501 IPR003960 GO:0005524|GO:0016887
Vra6g1467 794 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 2 784 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vra6g1467 794 Gene3D Peptidase M41 588 775 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vra6g1467 794 MobiDBLite consensus disorder prediction 54 74 - -
Vra6g1467 794 Gene3D - 325 513 IPR027417 -
Vra6g1467 794 CDD AAA 358 512 - -
Vra6g1467 794 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 322 770 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vra6g1467 794 Coils Coil 727 747 - -
Vra6g1467 794 SUPERFAMILY FtsH protease domain-like 595 772 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vra6g1467 794 SMART AAA_5 380 515 IPR003593 -
Vra6g1467 794 Pfam AAA+ lid domain 535 578 IPR041569 -
Vra6g1467 794 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE YME1L1 120 775 - -
Vra6g1467 794 Gene3D - 514 587 - -
Vra6g1467 794 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 613 IPR027417 -
Vra6g1467 794 Pfam ATPase family associated with various cellular activities (AAA) 384 512 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1467 Vra-Chr6 28923092 28946396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1467 2 772 Miscellaneous Gene Families AT5G53170 75.954 0.0 1157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1467 K08955 - gmx:100815980 1285.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1467 6 28923092 28946396 Vra6g1467 6 28923092 28946396 ECH