Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1333 ATGGCCACACTTCAAGCTTCTCTTCTCTCCAAACCTTCCCTTCTCTCCAAACCTTCCCTCCCATTCCCATTCCCGTTCCTCTCTCCGAACCACTCCCCATTCTCCCTCTCCTTCCCCCCCATGCGCCGCGTCCTCTCCACACCGTTATGCTGCACCTTCTGCCCCTCCGAACCCAATCTCAGCCCCTCCGAACCGGAACACGAAGCCGGTTCAGCCAACACCGAAGAGCCGGGTATAAATTCAACCGAAGAAGGTGCAGCTTCGGTTTCAGATTCGGGTTTGGAAGAAGAAGAAGGCGCCGAGGCTGTGCTTCGGAGTGGCGCGGATTCGGAGAAGATTGTTGTTGCGAGTGGAAGGCTCTCGATAGTGGTGTTCTTTGTGGGGCTGTGGGTGAAGGCGAGGGACCGCGTGAAGAAGGCTTTTTCGGAGCTTCTCGATTGGTGGCCGTTCTGGCGCCAGGAGAAGCGCCTCGAGCGATTGGTCGCTGACGCCGACGCGAATCCCCAGGATGCCACCAAACAGAGTGCTCTGCTTGTTGAACTCAATAAACACAGTCCTGAATCTGTCATCAAGTGGTTTGAACAAAGGGATCGAGCTGTAGACAGTAAAGGGGTTGCGGAATATCTTCGAGCTCTTGTGGTCACTAATGCTATTAGCGAATATCTTCCTGATGAGGATTCTGGAAAAGCTTCTAGCCTTCCTACCCTGTTGCAAGATTTGAAGCAGCGTGCATTGGGTAACTCAGATGAAACTTTTCTTAGCCCTGGAATATCTGACAAGCTGCCACTACATGTGGTTATGGTTGATCCAAAAGTATCAAATAAATCACGTTTTACACAAGAGCTTATCTCAACTATTTTGTTCACTGTAGCTGTGGGGTTGGTCTGGTTTATGGGTGCTGCTGCACTTCAAAAATACATTGGAAGCTTGGGTGGGATTGGACCTTCAGGAGTTGGATCAAGTTCTTCCTATGCCCCAAAGGAGCTGAATAAGGAAGTGATGCCTGAAAAGAATGTAAAAACCTTTAAGGATGTGAAAGGTTGTGATGATGCAAAGCAAGAACTTGAGGAAGTTGTGGAGTACCTAAAAAATCCATCTAAGTTTACACGCCTTGGAGGAAAGTTGCCAAAGGGAATTCTTTTGACAGGAGCACCTGGAACTGGAAAAACTCTGCTAGCTAAGGCTATTGCTGGAGAAGCTGGTGTTCCGTTTTTCTATCGAGCAGGCTCTGAATTTGAGGAGATGTTTGTTGGAGTTGGTGCTCGACGTGTTAGATCCTTATTTCAAGCAGCCAAAAAGAAGGCTCCTTGTATTATTTTTATTGATGAAATTGATGCTGTTGGATCAACAAGAAAACAATGGGAGGGCCACACAAAGAAGACATTGCATCAGCTACTTGTTGAAATGGATGGGTTTGAGCAGAATGAGGGAATAATATTGATGGCTGCAACAAACTTGCCTGATATTCTTGACCCAGCTTTAACTAGACCTGGAAGATTTGATCGGCATATTGTTGTACCAAATCCAGATGTGCGAGGTCGGCAAGAAATATTGGAACTCTATCTGCAAGATAAACCTGTAGCTGATGATGTAGATGTTAAAGCAATTGCTCGTGGTACCTCAGGGTTTAATGGGGCAGATCTTGCGAACTTGGTAAATGTCGCTGCCATTAAAGCTGCAGTTGAAGGTGCAGAGAAAGTAACAGCTGCGCAGTTGGAGTTTGCAAAAGACAGAATAGTTATGGGTACTGAGCGGAAAACAATGTTTGTATCAGAAGAGTCAAAGAAGCTTACTGCTTATCATGAGAGCGGCCATGCAATTGTTGCCCTTAACACGGATGGTGCACATCCAATTCACAAGGCAACAATCATGCCACGTGGATCTGCTTTAGGAATGGTCACTCAGCTTCCATCAAGTGACGAGACATCAATAAGCAAGAAACAGTTGTTAGCTCGCCTTGATGTGTGTATGGGAGGAAGAGTTGCAGAAGAGCTTATCTTTGGCCAGGATTATGTCACAACTGGAGCAAGTAGTGATCTCCACACTGCTACTGAGCTTGCCCAATACATGGTATCGAATTGTGGGATGAGTGATGCAATCGGGCCAGTTAATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGGTTGTGAAACTCCTTCGAGAAGCATATGATCGTGTGAAAGCCCTTTTGAAAAAGCATGAGAAGGCATTACATGTGCTGGCAAATGCATTATTAGAGTACGAGACACTTAGTGCAGAAGAAATCAGGAGAATACTTCTCCCATATCGGGAAGCACGGCTACCAGAACAACAGGAACAAGAAGCAGCAGAAGGGGATCTGGTGTTGGTCTCCCCTCCTTTGTGCATGGCATTCTTGTCGTAA 2400 0.4654 MATLQASLLSKPSLLSKPSLPFPFPFLSPNHSPFSLSFPPMRRVLSTPLCCTFCPSEPNLSPSEPEHEAGSANTEEPGINSTEEGAASVSDSGLEEEEGAEAVLRSGADSEKIVVASGRLSIVVFFVGLWVKARDRVKKAFSELLDWWPFWRQEKRLERLVADADANPQDATKQSALLVELNKHSPESVIKWFEQRDRAVDSKGVAEYLRALVVTNAISEYLPDEDSGKASSLPTLLQDLKQRALGNSDETFLSPGISDKLPLHVVMVDPKVSNKSRFTQELISTILFTVAVGLVWFMGAAALQKYIGSLGGIGPSGVGSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPVADDVDVKAIARGTSGFNGADLANLVNVAAIKAAVEGAEKVTAAQLEFAKDRIVMGTERKTMFVSEESKKLTAYHESGHAIVALNTDGAHPIHKATIMPRGSALGMVTQLPSSDETSISKKQLLARLDVCMGGRVAEELIFGQDYVTTGASSDLHTATELAQYMVSNCGMSDAIGPVNIKERPSSEMQSRIDAEVVKLLREAYDRVKALLKKHEKALHVLANALLEYETLSAEEIRRILLPYREARLPEQQEQEAAEGDLVLVSPPLCMAFLS* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1333 799 Pfam Peptidase family M41 589 764 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso14g1333 799 PANTHER METALLOPROTEASE M41 FTSH 115 771 - -
Gso14g1333 799 SMART AAA_5 375 510 IPR003593 -
Gso14g1333 799 Gene3D Peptidase M41 583 770 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso14g1333 799 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 328 765 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gso14g1333 799 MobiDBLite consensus disorder prediction 60 103 - -
Gso14g1333 799 CDD AAA 353 507 - -
Gso14g1333 799 ProSitePatterns AAA-protein family signature. 478 496 IPR003960 GO:0005524|GO:0016887
Gso14g1333 799 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE YME1L1 115 771 - -
Gso14g1333 799 Pfam ATPase family associated with various cellular activities (AAA) 379 507 IPR003959 GO:0005524|GO:0016887
Gso14g1333 799 Gene3D - 319 508 IPR027417 -
Gso14g1333 799 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 5 782 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gso14g1333 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 607 IPR027417 -
Gso14g1333 799 Gene3D - 509 582 - -
Gso14g1333 799 Pfam AAA+ lid domain 530 573 IPR041569 -
Gso14g1333 799 SUPERFAMILY FtsH protease domain-like 590 768 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso14g1333 799 Coils Coil 722 742 - -
Gso14g1333 799 MobiDBLite consensus disorder prediction 74 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1333 Gso-Chr14 37682415 37712280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1333 2 788 Miscellaneous Gene Families AT5G53170 73.144 0.0 1123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1333 K08955 - gmx:100815980 1443.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1333 14 37682415 37712280 Gso13g0251 13 13316256 13331071 GST