Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1347 ATGGGAGTTGTTACTGTTTCTACCTTAGCTGCTAGGACGCCATTAAGATTGAATACAAGGTTGACCAGTCATCAGCAGGTGCATAAAAGACCTTTAATTGTAGCTTTTAAAGGAAATAAATTGAATAAAGCCGCTTTGGTTTCACCTCAGGAGCAAATTCCTCTACCCATAGAAACAGCAAAGAAAGACCAAAAAAGGGTAGGAAAGACTAGTGAGTCTCTGAAGAGAGTGAGAGCTGTCTCTATTGTTGAAACCTCTCCATGCACCTTGGATATGGACTACAATGAAGCTGCAGCCAAACTTGAAAATATATATAAACTCAGCCCTGTATCTGATACCTGTAATATGGAAGATATTGATAGTAAAGTCGAGAGAGTCTTGTGGAGGAGGAAGAAGGTTGGTAATGAACATGATGATGAAAATTGTGATATTGTGGTTAGAAACCAGAATAAGAAGGCCAAACGATTGAGTCTTGATAAGAGGATTACATTGAAAAATAATGCAAAGGAGGAAGTGATTGACCAAACTCAGAAGATAAGAAATGTTAAGAATAGAGTACAAAATATTGATGTGCTTATCAGGGATTATTCAGCATCAACTGATTTAGTTAGCATGGACTGGAAGAAAATGAAGATTCCGGCAGTTCTTCCTTCTTCAGAGCATGCATGGTTGTTCAAGTTGATGCAACCAATGAAGGCACTCCTACAAGCAAAAGAAGATTTACAGTCAGTGGGGAAAGAAATTACAGATGGTGAACTAGCTGATGCAACAAACATGAGCATTATTCAAGTAAGGAAAGCTATAGAGGTTGGCCGAGCTGCAAGAAACAAGCTCATAAAGCACAATCTCCGGCTTGTGTTGTTCGTGATTAGCAAATATTTTCAAGATTTTGCAAGTGGCCGGAGGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGACTTATCACAGCAATTGATCGTTTTGAGCCAAAAAGAAGACTTCAGCTATCTACATACAGTTTATTTTGGATAAGACATTCTATCGTTCGTTCCATAACCCTCTCAAGCTTCACACGCGTTCCTTTTGGACTTGAAAGGGTAAGAGTAGATATCCAAAGAACTAAACTTAAGTTAACATTTGAGCTCCAGAGGTCACCAACGGAAGAAGAGTTAGTAGAAAGAATTGGGATCTCACCTGAAAGATATTATGAAGTAATGAAGGCATCAAAACCCATTTTATCCCTTCATTCAAGACATATAACCACACAAGAGGAGTATATTAATGGGATTACTGATGTTGATGGTGTTAATGGTGATAATAGGAGGCAACTTGCTGTTCTAAGACTTGCTCTTGATGATGTGCTTGATTCCTTGAAGCCAAAGGAGAGCCTAGTGATCAGACAGAGATATGGACTTGATGGCAAGGGTGACAGGACATTGGGAGAAATCGCTGGGAACTTGAATATTTCTAGGGAAATGGTTCGGAAGCATGAAGTCAAGGCTCTCATGAAGCTTAAGCATCCAGCACGGTTGGATTATCTTCGTCGTTATGTTGTATAA 1539 0.3938 MGVVTVSTLAARTPLRLNTRLTSHQQVHKRPLIVAFKGNKLNKAALVSPQEQIPLPIETAKKDQKRVGKTSESLKRVRAVSIVETSPCTLDMDYNEAAAKLENIYKLSPVSDTCNMEDIDSKVERVLWRRKKVGNEHDDENCDIVVRNQNKKAKRLSLDKRITLKNNAKEEVIDQTQKIRNVKNRVQNIDVLIRDYSASTDLVSMDWKKMKIPAVLPSSEHAWLFKLMQPMKALLQAKEDLQSVGKEITDGELADATNMSIIQVRKAIEVGRAARNKLIKHNLRLVLFVISKYFQDFASGRRFQDLCQAGVKGLITAIDRFEPKRRLQLSTYSLFWIRHSIVRSITLSSFTRVPFGLERVRVDIQRTKLKLTFELQRSPTEEELVERIGISPERYYEVMKASKPILSLHSRHITTQEEYINGITDVDGVNGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARLDYLRRYVV* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1347 512 Pfam Sigma-70 region 3 362 426 IPR007624 GO:0003700|GO:0006352|GO:0006355
Gso14g1347 512 Pfam Sigma-70, region 4 447 500 IPR007630 GO:0003700|GO:0006352|GO:0006355
Gso14g1347 512 Gene3D RNA Polymerase Primary Sigma Factor 69 351 - -
Gso14g1347 512 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 419 507 IPR013324 -
Gso14g1347 512 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 274 500 IPR014284 GO:0003700|GO:0006352|GO:0006355
Gso14g1347 512 Gene3D - 352 403 IPR036388 -
Gso14g1347 512 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 512 - -
Gso14g1347 512 PRINTS Major sigma-70 factor signature 305 318 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso14g1347 512 PRINTS Major sigma-70 factor signature 329 337 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso14g1347 512 PRINTS Major sigma-70 factor signature 451 463 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso14g1347 512 PRINTS Major sigma-70 factor signature 472 487 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso14g1347 512 PRINTS Major sigma-70 factor signature 487 498 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso14g1347 512 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 97 345 IPR013325 GO:0003700|GO:0006352|GO:0006355
Gso14g1347 512 Gene3D - 435 512 IPR036388 -
Gso14g1347 512 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 512 - -
Gso14g1347 512 Coils Coil 165 185 - -
Gso14g1347 512 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 353 413 IPR013324 -
Gso14g1347 512 Pfam Sigma-70 region 2 278 345 IPR007627 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1347 Gso-Chr14 39369550 39374618 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1347 K03093 - gmx:100811515 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1347 14 39369550 39374618 Gso4g1995 4 50293586 50296701 PCT
Gso6g1063 6 10330226 10333796 Gso14g1347 14 39369550 39374618 PCT