Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0251 ATGGCCACACTCCAAGCTTCCCTTCTCTCCAAACCTTCCCTCCCATTCCCGTTCCTGTCTCCGAACCACTCCCCATTCTCCCTCTCCTTCCCCCCCACGCGCCGCGTCCCTTCCACGCTCCTATGTTGCACCTTCCGCCCCGAACCCAACCCCTCTGAACTGGAACCCGAACCCGGTTCAGCCAACACCGAAGAAGAACCGGGTATAAATTCACCCGAAGAAGAAAAAGAAGGTGCAGCTTCGGTTTCAGATTTGGGTTTGGAAGAAGAAGGCGCCGAGGCTCTCGATAGTGGCGCTGATTCGGAGAAGATTGCGAATGGAAGGCGGCTCTCGATAGTGGCGTTCTTTGTGGGGCTGTGGGTGAAGGCGAGGGAGAGTCTGAAGAGGGCCTTTTCGGAGCTTCTTGATTGGTGGCCGTTCTGGCGCCAGGAGAAGCGCCTCGAGCGGTTGGTCGCCGACGCCGACGCGAATCCGCAGGATGCTGCCAAGCAGAGTGCTCTGCTCGTTGAACTCAATAAGCAGAGTCCTGAATCTGTCATCAAGTGGTTTGAACAAAGGGATCGAGCTGTGGACAGTAGAGGGGTTGCGGAATATCTTCGAGCTCTTGTGGTCACTAATGCTATTAGTGAATATCTTCCTGATGAGGATTCTGGAAAAGCTTCTAGCCTTCCTACCCTGTTGCAAGAGTTGAAGCAGCGTGCATTGGGTAACTCAGATGAAACTTTTGTTAGCCCTGGAATATCTGACAAGCAGCCACTACATGTGGTTATGGTTGATCCAAAAGTATCAAATAAGTCACGTTTTGCACAAGAGCTTATCTCAACTATTTTGATCACTGTAGCTGTGGGGTTAGTCTGGTTTATGGGTGCTGCTGCACTTCAAAAATACATTGGAAGCTTGGGTGGGATTGGACCTTCAGGAGTTGGATCAAGTTCTTCCTATGCCCCAAAGGAGCTAAATAAGGAAGTGATGCCTGAAAAGAATGTAAAAACCTTTAAGGATGTGAAAGGTTGTGATGATGCAAAGCAAGAACTTGAGGAAGTTGTGGAGTACCTAAAAAATCCATCTAAGTTTACACGCCTTGGAGGAAAGTTGCCAAAGGGGATTCTTTTGACAGGAGCACCTGGAACTGGAAAAACTCTGCTAGCCAAGGCTATTGCTGGAGAAGCAGGTGTCCCATTTTTCTATCGAGCAGGCTCTGAATTTGAGGAGATGTTTGTTGGAGTTGGTGCTCGACGTGTTAGATCCTTATTTCAAGCAGCCAAAAAGAAGGCTCCTTGTATAATTTTTATTGATGAAATTGATGCTGTTGGATCAACAAGAAAACAATGGGAGGGCCACACAAAGAAGACATTGCATCAGCTACTTGTTGAAATGGATGGGTTTGAGCAGAATGAGGGAATAATATTAATGGCTGCAACAAACTTGCCTGATATTCTTGACCCAGCTTTAACGAGGCCTGGCAGATTTGATCGGCATATTGTTGTACCAAATCCAGATGTGCGAGGTCGGCAAGAAATATTGGAACTCTATCTGCAAGATAAACCTATAGCTGATGATGTAGATGTTAAAGCAATTGCTCGTGGTACCCCAGGGTTTAATGGAGCAGATCTTGCGAATTTGGTAAATGTTGCTGCCATTAAAGCTGCAGTTGAAGGTGCAGAGAAAGTAACAGCTGCACAATTGGAGTTTGCAAAAGACAGAATAGTTATGGGTACTGAGCGGAAAACAATGTTTATATCTGAAGAGTCAAAGAAGCTTACTGCTTATCATGAGAGCGGTCATGCAATTGTTGCCCTTAACACCGATGGTGCGTATCCAATTCACAAGGCAACAATCATGCCACGTGGATCTGCTTTAGGAATGGTCACTCAGCTTCCCTCAAGTGACGAGACATCAATAAGCAAGAAACAGTTGTTAGCTCGCCTTGATGTTTGTATGGGAGGAAGAGTTGCAGAGGAGCTTATCTTTGGCCAGGATTATGTCACAACTGGAGCAAGTAGTGATCTCCACACTGCTACTGAGCTTGCCCAATACATGGTATCAAATTGTGGGATGAGTGATGCAATCGGGCCAGTTAATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGGTTGTGAAACTCCTTAGAGAAGCATATGATCGCGTGAAAGCCCTTTTGAAAAAGCATGAGAAGGCATTACATGTGCTGGCAAATGCATTATTAGAGTATGAGACACTTAGTGCAGAAGAAATAAGGAGAATACTTCTCCCATATCGGGAAGGATGGCTGCCAGAACAACAGGAACAAGAAGCAGCAGAAGGGGATCTGGTGTTGGTGTAA 2340 0.4641 MATLQASLLSKPSLPFPFLSPNHSPFSLSFPPTRRVPSTLLCCTFRPEPNPSELEPEPGSANTEEEPGINSPEEEKEGAASVSDLGLEEEGAEALDSGADSEKIANGRRLSIVAFFVGLWVKARESLKRAFSELLDWWPFWRQEKRLERLVADADANPQDAAKQSALLVELNKQSPESVIKWFEQRDRAVDSRGVAEYLRALVVTNAISEYLPDEDSGKASSLPTLLQELKQRALGNSDETFVSPGISDKQPLHVVMVDPKVSNKSRFAQELISTILITVAVGLVWFMGAAALQKYIGSLGGIGPSGVGSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPIADDVDVKAIARGTPGFNGADLANLVNVAAIKAAVEGAEKVTAAQLEFAKDRIVMGTERKTMFISEESKKLTAYHESGHAIVALNTDGAYPIHKATIMPRGSALGMVTQLPSSDETSISKKQLLARLDVCMGGRVAEELIFGQDYVTTGASSDLHTATELAQYMVSNCGMSDAIGPVNIKERPSSEMQSRIDAEVVKLLREAYDRVKALLKKHEKALHVLANALLEYETLSAEEIRRILLPYREGWLPEQQEQEAAEGDLVLV* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0251 779 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE YME1L1 105 759 - -
Gso13g0251 779 SUPERFAMILY FtsH protease domain-like 580 757 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso13g0251 779 ProSitePatterns AAA-protein family signature. 468 486 IPR003960 GO:0005524|GO:0016887
Gso13g0251 779 Gene3D - 309 498 IPR027417 -
Gso13g0251 779 Pfam ATPase family associated with various cellular activities (AAA) 369 497 IPR003959 GO:0005524|GO:0016887
Gso13g0251 779 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 317 755 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gso13g0251 779 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 2 772 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gso13g0251 779 SMART AAA_5 365 500 IPR003593 -
Gso13g0251 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 607 IPR027417 -
Gso13g0251 779 Coils Coil 712 732 - -
Gso13g0251 779 Pfam Peptidase family M41 579 754 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso13g0251 779 MobiDBLite consensus disorder prediction 42 100 - -
Gso13g0251 779 PANTHER METALLOPROTEASE M41 FTSH 105 759 - -
Gso13g0251 779 Gene3D Peptidase M41 573 759 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso13g0251 779 CDD AAA 343 497 - -
Gso13g0251 779 Pfam AAA+ lid domain 520 563 IPR041569 -
Gso13g0251 779 Gene3D - 499 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0251 Gso-Chr13 13316256 13331071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0251 2 757 Miscellaneous Gene Families AT5G53170 73.990 0.0 1128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0251 K08955 - gmx:100794322 1436.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1333 14 37682415 37712280 Gso13g0251 13 13316256 13331071 GST