Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g01605 ATGTATGGCGGATGTGATCTACTGCTTCCCCCCGAAATATCTGCTCCCCCATTCCAAAAGCGCCACATTAACTTTCTTCGCCACGTCACGGCTAACACGCCACATCCATTCCACGAGTACCGTTCATACGCTGCTTCTCCAATTCCACAGTCCGATCTGACCGTCGATTTTTTTTCATACATAAAATTGTGGACACTGAATTTTTGGTATCTCGCGTTTAACAAAACCACAACCTCAACGCGTGCGTTCTCAGATTTTCGCGGTGGTCGAAAAATCTGCGTGGGTTCCGGGACTTGGCTCGGACATTGCAGTTTAAGGAAACCTGGCATGGGAGTTGTTACTGTTTCTACCTTAGCTGCTAGGACGCCATTAAGATTGAATACAAGGTTGACCAGTCATCAGCAGGAGCAAATTCCTCTACCCATAGAAACAGCAAAGAAAGACCAAAAAAGGGTAGGAAAGACTAGTGAGTCTCTGAAGAGAGTGAGAGCTGTCTCTATTGTTGAAACCTCTCCATGCACCTTGGATATGGACTACAATGAAGCTGCAGCCAAACTTGAAAATATATATAAACTCAGCCCTGTATCTGATACCTGTAATATGGAAGATATTGATAGTAAAGTCGAGAGAGTCTTGTGGAGGAGGAGGAAGGTTGGTAATGAACATGATGATGAAAATTGTGATATTGTGGTTAGAAACCAGAATAAGAAGGCCAAACGATTGAGTCTTGATAAGAGGATTACATTGAAAAATAATGCAAAGGAGGAAGTGATTGACCAAACTCAGAAGATAAGAAATGTTAAGAATAGAGTACAAAATATTGATGTGCTTATCAGGGATTATTCAGCATCAACTGATTTAGTTAGCATGGACTGGAAGAAAATGAAGATTCCGGCAGTTCTTCCTTCTTCAGAGCATGCATGGTTGTTCAAGTTGATGCAACCAATGAAGGCACTCCTACAAGCAAAAGAAGATTTACAGTCAGTGGGGAAAGAAATTACAGATGGTGAACTAGCTGATGCAACAAACATGAGCATTATTCAAGTAAGGAAAGCTATAGAGGTTGGCCGAGCTGCAAGAAACAAGCTCATAAAGCACAATCTCCGGCTTGTGTTGTTCGTGATTAGCAAATATTTTCAAGATTTTGCAAGTGGCCGGAGGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGACTTATCACAGCAATTGATCGTTTTGAGCCAAAAAGAAGACTTCAGCTATCTACATACAGTTTATTTTGGATAAGACATTCTATCGTTCGGTCCATAACCCTCTCAAGCTTCACACGTGTTCCTTTTGGACTTGAAAGGGTAAGAGTAGATATCCAAAGAACTAAACTTAAGTTAACATTTGAGCTCCAGAGGTCACCAACGGAAGAAGAGTTAGTAGAAAGAATTGGGATCTCACCTGAAAGATATTATGAAGTAATGAAGGCATCAAAACCCATTTTATCCCTTCATTCAAGACATATAACCACACAAGAGGAGTATATTAATGGGATTACTGATGTTGATGGTGTTAATGGTGATAATAGGAGGCAACTTGCTGTTCTAAGACTTGCTCTTGATGATGTGCTTGATTCCTTGAAGCCAAAGGAGAGCCTAGTGATCAGACAGAGATATGGACTTGATGGCAAGGGTGACAGGACATTGGGAGAAATCGCTGGGAACTTGAATATTTCTAGGGAAATGGTTCGGAAGCATGAAGTCAAGGCTCTCATGAAGCTTAAGCATCCAGCACGGTTGGATTATCTTCGTCGTTATGTTGTATAA 1794 0.413 MYGGCDLLLPPEISAPPFQKRHINFLRHVTANTPHPFHEYRSYAASPIPQSDLTVDFFSYIKLWTLNFWYLAFNKTTTSTRAFSDFRGGRKICVGSGTWLGHCSLRKPGMGVVTVSTLAARTPLRLNTRLTSHQQEQIPLPIETAKKDQKRVGKTSESLKRVRAVSIVETSPCTLDMDYNEAAAKLENIYKLSPVSDTCNMEDIDSKVERVLWRRRKVGNEHDDENCDIVVRNQNKKAKRLSLDKRITLKNNAKEEVIDQTQKIRNVKNRVQNIDVLIRDYSASTDLVSMDWKKMKIPAVLPSSEHAWLFKLMQPMKALLQAKEDLQSVGKEITDGELADATNMSIIQVRKAIEVGRAARNKLIKHNLRLVLFVISKYFQDFASGRRFQDLCQAGVKGLITAIDRFEPKRRLQLSTYSLFWIRHSIVRSITLSSFTRVPFGLERVRVDIQRTKLKLTFELQRSPTEEELVERIGISPERYYEVMKASKPILSLHSRHITTQEEYINGITDVDGVNGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARLDYLRRYVV 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g01605 597 Coils Coil 250 270 - -
Gma14g01605 597 Pfam Sigma-70, region 4 532 585 IPR007630 GO:0003700|GO:0006352|GO:0006355
Gma14g01605 597 Gene3D RNA Polymerase Primary Sigma Factor 150 436 - -
Gma14g01605 597 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 183 430 IPR013325 GO:0003700|GO:0006352|GO:0006355
Gma14g01605 597 PRINTS Major sigma-70 factor signature 536 548 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma14g01605 597 PRINTS Major sigma-70 factor signature 557 572 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma14g01605 597 PRINTS Major sigma-70 factor signature 390 403 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma14g01605 597 PRINTS Major sigma-70 factor signature 414 422 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma14g01605 597 PRINTS Major sigma-70 factor signature 572 583 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma14g01605 597 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 438 498 IPR013324 -
Gma14g01605 597 Pfam Sigma-70 region 2 363 430 IPR007627 GO:0003700|GO:0006352|GO:0006355
Gma14g01605 597 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 359 585 IPR014284 GO:0003700|GO:0006352|GO:0006355
Gma14g01605 597 Pfam Sigma-70 region 3 447 511 IPR007624 GO:0003700|GO:0006352|GO:0006355
Gma14g01605 597 Gene3D - 437 488 IPR036388 -
Gma14g01605 597 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 126 597 - -
Gma14g01605 597 Gene3D - 520 597 IPR036388 -
Gma14g01605 597 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 126 597 - -
Gma14g01605 597 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 504 592 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g01605 Gma-Chr14 41211313 41216443 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g01605 K03093 - gmx:100811515 924.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g01605 14 41211313 41216443 Gma04g02277 04 53233546 53236385 PCT
Gma06g01124 06 10542339 10545947 Gma14g01605 14 41211313 41216443 PCT