Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02894 ATGGGAGTTGTGACTGTTTCTAGTTCAGCTGCTCGAACTCCGCTAGGATTGAGCAAGAAGTTTTCGACTCACCATCCGGTATTGAAGAGGCCGTTAACGGTAGCGTTTAAAGGAGATAATAAGCAGAATGACACGGTTTTGGTTGTTACAAAAGAGAAAATTCCGACGAAAGATGTAACGGTCAATACGCACAAGAAAAGGATAGCGAAAACGAAGAAATTGCCTAAGAAGGCAAGAGGTGTTTTGATTGAGGAAACTTTTCAATCGTCGTTGGATGTTGACTATAATGAAGCTGCTGCTATACTTGAAAATATATTCAAACTTAGCCCGACGTTAGATGTGTGTGATGCAGATTATATAGATAGTGCGATCAAAAGAGTTTCTCGAAGGGGTAGGAAGATTGGTGATGCAAGTAAAGAGGGGTTAGAGAATGATAGGGTGGTTAGAACCCAGAAAACGAAAGCCAAACGGATGAATCTTGATGAGAGGATTGCATTAAAAAAGGACAATGATAGTGAAGATGTTACTCCAACTCGGAAAAAAAGAAATGGCAGGAATAGAACTGGGAAATTTGAGGAACTTCGTAGGGAGTTTTCAGTACCAGTTGATTTGGTGAGTCTGGACTGGAAAAAAATGAAAATACCTCCGGTTCTTCCTTCTTCGGAGCATGCATTTTTATTCAAGTTGATGCAACCAATGAAGGCACTCCTTCAAGTGAAAGAAGATTTACAGAAGCAGCTGGAAAGAGAACCTACAGCGGAAGAAATAGGTGACGCAACAAATATGAGCACTACTAAAGTAAAGAAAGCAATAGAGATTGGTCGAGCTGCAAGAAACAGGCTGATAAAGCACAATCTCCGGCTTGTCTTGTTTGTGATCAACAAATATTTTTCAGATTTAGCCAATAGCCAAAGGTTTCAAGACCTTTGCCAGGCCGGAGTTAAGGGACTTATGACAGCAATTGACCGTTTTGAACCAAACCGGAGATTTCGGCTATCAACCTATGGTTTGTTTTGGATAAGACATGCTATCACTCGTTCCATGACCCTCTCAAGCTTCTCACGTGTGCCCTTTGGACTTGAGTCGGTTAGAGCAAAGATCCGAAAAGCTAAGATTGAGTTAACATATAAGCTTCAGAAGCCACCAACAGAGGAAGAAATAATAGAAAGAGCTCATATATCACCTGAAAGATACCGCGATGTAATGATGGCATCAAAACCCTTTCTTTCATTGCATGCAAGACATCCAACAACGCAAGATGAGTATATCGATAGCATCGTTGATGATGGTGGTGTTGATGGTGATAACAGGAGGCAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTGCTTGATTCCCTGAAGCCTAAGGAAAACTTGGTGATCAGACAGAGATTTGGACTTGATGGTAAGGGTGACAGAACTTTGGGAGAAATCGCCTCAAACTTGAACATCTCTAGGGAAATGGTGAGAAAGCATGAAGTCAAGGCTCTCATGAAGCTCAAGCATTCAGCTCGATTGGATTATCTTCGTCGATATGTTGTATAA 1548 0.4141 MGVVTVSSSAARTPLGLSKKFSTHHPVLKRPLTVAFKGDNKQNDTVLVVTKEKIPTKDVTVNTHKKRIAKTKKLPKKARGVLIEETFQSSLDVDYNEAAAILENIFKLSPTLDVCDADYIDSAIKRVSRRGRKIGDASKEGLENDRVVRTQKTKAKRMNLDERIALKKDNDSEDVTPTRKKRNGRNRTGKFEELRREFSVPVDLVSLDWKKMKIPPVLPSSEHAFLFKLMQPMKALLQVKEDLQKQLEREPTAEEIGDATNMSTTKVKKAIEIGRAARNRLIKHNLRLVLFVINKYFSDLANSQRFQDLCQAGVKGLMTAIDRFEPNRRFRLSTYGLFWIRHAITRSMTLSSFSRVPFGLESVRAKIRKAKIELTYKLQKPPTEEEIIERAHISPERYRDVMMASKPFLSLHARHPTTQDEYIDSIVDDGGVDGDNRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKHSARLDYLRRYVV 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02894 515 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 356 426 IPR013324 -
Vivi3g02894 515 Gene3D - 228 270 IPR036388 -
Vivi3g02894 515 Gene3D - 355 406 IPR036388 -
Vivi3g02894 515 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 420 508 IPR013324 -
Vivi3g02894 515 PRINTS Major sigma-70 factor signature 308 321 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi3g02894 515 PRINTS Major sigma-70 factor signature 332 340 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi3g02894 515 PRINTS Major sigma-70 factor signature 475 490 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi3g02894 515 PRINTS Major sigma-70 factor signature 454 466 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi3g02894 515 PRINTS Major sigma-70 factor signature 490 501 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi3g02894 515 MobiDBLite consensus disorder prediction 166 188 - -
Vivi3g02894 515 Pfam Sigma-70, region 4 450 503 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vivi3g02894 515 NCBIfam sigma-70 family RNA polymerase sigma factor 277 503 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vivi3g02894 515 Pfam Sigma-70 region 3 236 276 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vivi3g02894 515 Pfam Sigma-70 region 3 365 432 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vivi3g02894 515 Pfam Sigma-70 region 2 281 346 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vivi3g02894 515 Gene3D - 438 515 IPR036388 -
Vivi3g02894 515 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 86 514 - -
Vivi3g02894 515 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 202 348 IPR013325 GO:0003700|GO:0006352|GO:0006355
Vivi3g02894 515 Gene3D - 271 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02894 Vivi-Chr3 48120459 48124857 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02894 K03093 - gmx:100776369 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02894 3 48120459 48124857 Vivi3g02894 3 48120459 48124857 PCT