Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0524 Acco10g2001 Acco05g2267 Accr4g00784 Accr3g00738 . Adu06g02810 Aed4g1803 . . . Ahy16g3107 . Aip06g03337 . Alju08g0797 Alju07g2233 . . . . . Arst6g03646 Bach12g00504 Bach3g01949 Bisa09g1204 . Bva10g00368 Bva06g02401 Car05g02964 Car04g03179 Cca03g01561 . Dere04g0566 Dere05g2161 Dod08g1676 . Enph1g1388 Enph7g0965 Glsi08g1584 Glsi10g0705 . . Gma04g00627 Gma06g00614 . . . . Lal21g0340 Lal4g0222 Lal17g0234 . . . Lan3g1071 Lan3g1071 Lan3g1071 . . . Lapu9g01884 Lapu8g00613 Lasa5g04072 Lasa5g04072 . . . . . . . . Lja1g3873 Lja5g2839 Mal2g0871 Mal1g5519 Mepo3g07442 Mepo4g00640 . . Mibi05g0720 Mibi08g1960 Mtr3g3920 Mtr1g0218 . Phac1g00698 Phco7g00764 Phco2g00598 Prci15g1001 Prci2g1005 . Psa6g0675 Pste2g01763 . . . . . Pumo10g00070 . Pvu9g0962 Pvu1g0528 . . Seca4g00969 . Spst9g00796 Spst8g01553 Ssu1g3450 . Sto5g0851 Sto9g3302 Tpr7g0631 Tpr1g3392 . . Tsu07g00645 Tsu01g00697 Vian4g01963 . Vifa2g04024 . Vimu10g02952 Vimu1g02600 Viun9g03063 . Vivi3g01329 Vivi4g05089 Vra5g1199 .
Vvi4g0525 . . . . . . Aed4g1802 . . Aev08g2615 . Ahy18g2681 . Aip08g03065 . . . Amo18g1613 . . . . . . . . . . Car05g02963 . Cca03g01562 . . . . Dod09g0918 . . . . . . Gma04g00626 . . . . . . . Lal17g0233 . . . . . . . . . . . . . . . . . . . . . Lja1g3874 . Mal2g0873 . . . . . . . Mtr3g3918 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu1g3451 . Sto5g0852 . Tpr7g0632 . . . Tsu07g00646 . . . . . . . . . . . Vra3g1185 .
Vvi4g0526 . . . . . . . . . . . . . . . . . . . Apr7g0377 . . . . . . . . . . . . . . . . . . . . . Gma17g01999 . . . . . . . . . . . Lal10g0021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0527 . . . . . . . . . . Ahy16g3110 . Aip06g03339 . . . . . . . . . . . . . . . . Car04g03180 . . . . Dod08g1678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja5g2840 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g3303 . . . . . . . . . . . . . . . . . .
Vvi4g0528 . . . . . . . . . . . . . . . . . . . Apr7g0376 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0529 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva10g00369 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0530 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0531 . . . . . . . Aed6g1146 . . . . . . . . . . . Apr7g0375 . . . . . . . Bva06g02400 . . . Cca05g00531 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g0674 . . . . . . . . . . . . . . . . . Ssu5g0581 . . . . . . . . . . . . . . . . . . . Vra6g1564
Vvi4g0532 . . . . . Adu06g02811 . . . . . . . . . . . . . . . Arst6g03648 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu8g00614 . Lasa6g00604 . . . . . . . . . . . . . . . . . . . . . Phac1g00697 . Phco2g00597 . . . . . . . . . . . . . Pvu1g0527 . Rops9g01903 . . . Spst8g01551 . . . . . . . . . . . Vian7g00419 . Vifa3g04550 . Vimu1g02602 . Viun8g00786 . Vivi4g05090 . .
Vvi4g0533 . . . . . . Aed4g1801 . . . Ahy16g3111 . Aip06g03340 . . . . . . . . . . . . . Bva10g00370 Bva06g02399 Car05g02962 Car04g03181 Cca03g01563 . . . Dod08g1679 . . . . . . . Gma04g00625 Gma06g00612 . . . . . . . . . Lal10g0022 . . . . . . . . . . . . . . . . . . . Lja5g2841 Mal2g0874 Mal1g5521 . . . . . . Mtr3g3917 Mtr1g0220 . . . . . . . Psa6g0673 . . . . . . . . . . . . . . . . Ssu1g3452 . Sto5g0853 . Tpr7g0633 Tpr1g3394 . . Tsu07g00647 Tsu01g00695 . . . . . . . . . . Vra3g1169 .
   
Previous Page 465 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Acco Acco05g2267 Chr05 38680019 38685559 +
Accr Accr3g00738 Chr3 8263770 8271896 -
Adu Adu06g02810 Chr06 105314968 105321467 -
Alju Alju07g2233 Chr07 48302467 48310147 +
Arst Arst6g03646 Chr6 104509920 104516267 -
Bach Bach3g01949 Chr3 27403515 27408252 -
Dere Dere05g2161 Chr05 31767751 31788503 -
Enph Enph7g0965 Chr7 15366898 15373533 +
Glsi Glsi10g0705 Chr10 4491803 4497667 +
Lapu Lapu8g00613 Chr8 23756864 23767078 -
Lasa Lasa5g04072 Chr5 625791996 625795808 +
Mepo Mepo4g00640 Chr4 8711699 8717905 +
Mibi Mibi08g1960 Chr08 36587027 36592819 +
Phac Phac1g00698 Chr1 5537113 5543916 +
Phco Phco2g00598 Chr2 5839177 5848205 +
Prci Prci2g1005 Chr2 7456177 7463248 -
Pvu Pvu1g0528 Chr1 5858480 5866501 +
Spst Spst8g01553 Chr8 17196576 17204500 +
Vimu Vimu1g02600 Chr1 37533905 37536711 -
Vivi Vivi4g05089 Chr4 181864941 181871193 -
Vvi Vvi4g0524 Chr4 4804236 4813742 -
Acco Acco10g2001 Chr10 32613205 32617837 +
Acco Acco05g2267 Chr05 38680019 38685559 +
Accr Accr4g00784 Chr4 7479296 7483514 -
Accr Accr3g00738 Chr3 8263770 8271896 -
Adu Adu06g02810 Chr06 105314968 105321467 -
Aed Aed4g1803 Chr4 22255776 22261172 +
Ahy Ahy16g3107 Chr16 146906313 146912704 -
Aip Aip06g03337 Chr06 130030572 130036260 -
Alju Alju08g0797 Chr08 5997251 6001945 -
Alju Alju07g2233 Chr07 48302467 48310147 +
Arst Arst6g03646 Chr6 104509920 104516267 -
Bach Bach12g00504 Chr12 3420592 3424917 +
Bach Bach3g01949 Chr3 27403515 27408252 -
Bisa Bisa09g1204 Chr09 17348658 17359451 +
Bva Bva10g00368 Chr10 4195828 4200724 -
Bva Bva06g02401 Chr06 15427423 15432599 +
Car Car05g02964 Chr05 74582877 74588648 +
Car Car04g03179 Chr04 60104945 60110918 -
Cca Cca03g01561 Chr03 34339852 34345598 -
Dere Dere04g0566 Chr04 5642307 5647226 +
Dere Dere05g2161 Chr05 31767751 31788503 -
Dod Dod08g1676 Chr08 39731377 39739635 -
Enph Enph1g1388 Chr1 39414236 39419907 +
Enph Enph7g0965 Chr7 15366898 15373533 +
Glsi Glsi08g1584 Chr08 11363778 11369554 -
Glsi Glsi10g0705 Chr10 4491803 4497667 +
Gma Gma04g00627 Chr04 5730776 5735699 +
Gma Gma06g00614 Chr06 5550518 5555890 +
Lal Lal21g0340 Chr21 2275973 2281460 +
Lal Lal4g0222 Chr4 1393951 1403063 +
Lal Lal17g0234 Chr17 1447458 1452513 +
Lan Lan3g1071 Chr3 23026493 23030789 -
Lan Lan3g1071 Chr3 23026493 23030789 -
Lan Lan3g1071 Chr3 23026493 23030789 -
Lapu Lapu9g01884 Chr9 33627764 33634824 -
Lapu Lapu8g00613 Chr8 23756864 23767078 -
Lasa Lasa5g04072 Chr5 625791996 625795808 +
Lasa Lasa5g04072 Chr5 625791996 625795808 +
Lja Lja1g3873 Chr1 48866668 48873117 -
Lja Lja5g2839 Chr5 55895463 55906839 -
Mal Mal2g0871 Chr2 10070088 10075771 -
Mal Mal1g5519 Chr1 130256415 130262786 -
Mepo Mepo3g07442 Chr3 87795155 87800861 +
Mepo Mepo4g00640 Chr4 8711699 8717905 +
Mibi Mibi05g0720 Chr05 6802252 6808612 -
Mibi Mibi08g1960 Chr08 36587027 36592819 +
Mtr Mtr3g3920 Chr3 53009595 53015453 +
Mtr Mtr1g0218 Chr1 2496475 2504971 -
Phac Phac1g00698 Chr1 5537113 5543916 +
Phco Phco7g00764 Chr7 5932256 5941008 +
Phco Phco2g00598 Chr2 5839177 5848205 +
Prci Prci15g1001 Chr15 6240912 6246329 +
Prci Prci2g1005 Chr2 7456177 7463248 -
Psa Psa6g0675 Chr6 22949365 22955236 +
Pste Pste2g01763 Chr2 18093905 18095658 +
Pumo Pumo10g00070 Chr10 1359528 1365027 -
Pvu Pvu9g0962 Chr9 14438565 14445276 +
Pvu Pvu1g0528 Chr1 5858480 5866501 +
Seca Seca4g00969 Chr4 15619310 15625717 -
Spst Spst9g00796 Chr9 6865179 6871275 +
Spst Spst8g01553 Chr8 17196576 17204500 +
Ssu Ssu1g3450 Chr1 88616730 88621620 -
Sto Sto5g0851 Chr5 5699565 5704651 -
Sto Sto9g3302 Chr9 33065056 33069091 -
Tpr Tpr7g0631 Chr7 5579647 5585451 -
Tpr Tpr1g3392 Chr1 38264261 38270350 -
Tsu Tsu07g00645 Chr07 5101635 5107504 -
Tsu Tsu01g00697 Chr01 6124176 6130075 +
Vian Vian4g01963 Chr4 36275184 36280163 -
Vifa Vifa2g04024 Chr2 1179890739 1179895191 +
Vimu Vimu10g02952 Chr10 40499533 40508214 -
Vimu Vimu1g02600 Chr1 37533905 37536711 -
Viun Viun9g03063 Chr9 38288082 38294027 -
Vivi Vivi3g01329 Chr3 21714821 21719168 -
Vivi Vivi4g05089 Chr4 181864941 181871193 -
Vra Vra5g1199 Chr5 18390432 18396631 -
Vvi Vvi4g0525 Chr4 4816141 4817854 +
Aed Aed4g1802 Chr4 22252253 22254089 -
Aev Aev08g2615 Chr08 24635195 24636009 -
Ahy Ahy18g2681 Chr18 129913414 129914976 +
Aip Aip08g03065 Chr08 120379943 120381783 +
Amo Amo18g1613 Chr18 31585366 31587765 +
Car Car05g02963 Chr05 74576734 74579747 -
Cca Cca03g01562 Chr03 34353061 34356677 +
Dod Dod09g0918 Chr09 28920676 28923500 -
Gma Gma04g00626 Chr04 5724877 5726271 -
Lal Lal17g0233 Chr17 1445600 1446832 -
Lja Lja1g3874 Chr1 48874618 48876649 +
Mal Mal2g0873 Chr2 10118767 10120136 +
Mtr Mtr3g3918 Chr3 52999896 53001425 -
Ssu Ssu1g3451 Chr1 88633434 88634177 +
Sto Sto5g0852 Chr5 5705601 5706335 +
Tpr Tpr7g0632 Chr7 5587389 5588692 +
Tsu Tsu07g00646 Chr07 5108902 5110588 +
Vra Vra3g1185 Chr3 12554328 12561701 +
Vvi Vvi4g0526 Chr4 4818334 4819266 -
Apr Apr7g0377 Chr7 9721489 9722564 -
Gma Gma17g01999 Chr17 35819120 35820049 -
Lal Lal10g0021 Chr10 236548 237492 -
Vvi Vvi4g0527 Chr4 4823523 4824458 -
Ahy Ahy16g3110 Chr16 146964957 146966551 -
Aip Aip06g03339 Chr06 130085019 130086289 -
Car Car04g03180 Chr04 60118076 60119246 -
Dod Dod08g1678 Chr08 39760040 39762398 -
Lja Lja5g2840 Chr5 55932508 55933536 -
Sto Sto9g3303 Chr9 33071521 33072471 -
Vvi Vvi4g0528 Chr4 4833640 4834572 -
Apr Apr7g0376 Chr7 9704545 9705694 -
Vvi Vvi4g0529 Chr4 4835774 4836703 -
Bva Bva10g00369 Chr10 4201754 4202149 -
Vvi Vvi4g0530 Chr4 4839707 4840639 -
Vvi Vvi4g0531 Chr4 4842066 4842998 -
Aed Aed6g1146 Chr6 16145081 16146028 +
Apr Apr7g0375 Chr7 9696730 9697701 -
Bva Bva06g02400 Chr06 15426405 15427340 +
Cca Cca05g00531 Chr05 11998582 11999548 +
Psa Psa6g0674 Chr6 22915015 22916773 +
Ssu Ssu5g0581 Chr5 12864751 12865680 +
Vra Vra6g1564 Chr6 30948102 30949251 -
Vvi Vvi4g0532 Chr4 4844194 4845123 -
Adu Adu06g02811 Chr06 105340928 105342199 -
Arst Arst6g03648 Chr6 104535390 104536661 -
Lapu Lapu8g00614 Chr8 23767942 23768871 -
Lasa Lasa6g00604 Chr6 21264864 21265814 +
Phac Phac1g00697 Chr1 5534662 5535625 +
Phco Phco2g00597 Chr2 5835401 5836330 +
Pvu Pvu1g0527 Chr1 5854316 5855245 +
Rops Rops9g01903 Chr9 34652034 34652966 -
Spst Spst8g01551 Chr8 16919386 16920315 +
Vian Vian7g00419 Chr7 10990720 10991649 -
Vifa Vifa3g04550 Chr3 1304691318 1304692256 -
Vimu Vimu1g02602 Chr1 37554517 37555446 -
Viun Viun8g00786 Chr8 6894028 6894957 +
Vivi Vivi4g05090 Chr4 181879315 181880767 -
Vvi Vvi4g0533 Chr4 4848214 4851436 -
Aed Aed4g1801 Chr4 22251445 22252614 +
Ahy Ahy16g3111 Chr16 146969713 146973300 -
Aip Aip06g03340 Chr06 130089532 130093145 -
Bva Bva10g00370 Chr10 4202480 4204380 -
Bva Bva06g02399 Chr06 15422785 15425388 +
Car Car05g02962 Chr05 74575752 74577172 +
Car Car04g03181 Chr04 60120422 60124232 -
Cca Cca03g01563 Chr03 34354758 34356451 -
Dod Dod08g1679 Chr08 39766256 39770033 -
Gma Gma04g00625 Chr04 5722799 5724127 +
Gma Gma06g00612 Chr06 5544729 5546077 +
Lal Lal10g0022 Chr10 238516 240690 -
Lja Lja5g2841 Chr5 55934967 55938902 -
Mal Mal2g0874 Chr2 10120540 10121645 -
Mal Mal1g5521 Chr1 130288495 130291563 -
Mtr Mtr3g3917 Chr3 52998430 52999992 +
Mtr Mtr1g0220 Chr1 2509341 2513211 -
Psa Psa6g0673 Chr6 22912171 22914687 +
Ssu Ssu1g3452 Chr1 88635246 88636606 -
Sto Sto5g0853 Chr5 5707180 5709276 -
Tpr Tpr7g0633 Chr7 5588610 5590537 -
Tpr Tpr1g3394 Chr1 38276883 38280638 -
Tsu Tsu07g00647 Chr07 5110324 5111645 -
Tsu Tsu01g00695 Chr01 6113052 6116421 +
Vra Vra3g1169 Chr3 12370884 12373959 +
Ahy Ahy16g3111 Chr16 146969713 146973300 -
Aip Aip06g03340 Chr06 130089532 130093145 -
Dod Dod08g1679 Chr08 39766256 39770033 -