Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01563 ATGAAGTTCTGGAAGATCCTGAAGAGCCAGATCGAGCAGACCCTGCCCGAGTGGCGTGACCAATTCTTGTCCTACAAAGACTTGAAGAAACTGTTGAAGGTTATGTGTCCTAAAGATGCACTCACTCCACCCCGTTTGGATGCTGAAGAGCTTAACCATTTCCTTCACCTTTTGGAGCTTGAGATTGATAAGTTTAATGCTTTCTTTGTTGACAAGGAAGAAGAGTATATCATCAAGTGGAAGGAGTTACAAGACAGAGTTGCCAGAGCTGTGGATTCAAACGTGGAGTTGATGTCACTAGGGAGGGAAATAGTGGATTTTCATGGGGAGATGGTTTTGTTAGAGAACTATACTGCACTCAACTACACAGGTCTAGTGAAGATAATAAAGAAATATGATAAGCGAACTGGTGCACTACATCGCTTGCCTTTTATCCAAGATGTGTTGAACCAGCCTTTTTTCAAGATTGATGTGCTTAACAAGCTTGTAAAGGAGTGTGAGGTGATACTGAGTATTCTTTTCACCAATGACTGGCTTTCAATTGGTGAGGATTATGAGGAGGATGAATGTGGCTCCGTGACTGAAAATGAAAACAAAGAGACGCTGATGCATGTTCCCAGAGAACTTGCTGAAATTGAAAACATGGAGAGCACGTTCACCAAACTAACTTTATCAGCACTGCGTAGCTTGGAAGAAATTAGGGGTAGAAGCTCGACAGTAAGCATTTTCTCATTGCCTCCTCTGCATGACTAG 753 0.425 MKFWKILKSQIEQTLPEWRDQFLSYKDLKKLLKVMCPKDALTPPRLDAEELNHFLHLLELEIDKFNAFFVDKEEEYIIKWKELQDRVARAVDSNVELMSLGREIVDFHGEMVLLENYTALNYTGLVKIIKKYDKRTGALHRLPFIQDVLNQPFFKIDVLNKLVKECEVILSILFTNDWLSIGEDYEEDECGSVTENENKETLMHVPRELAEIENMESTFTKLTLSALRSLEEIRGRSSTVSIFSLPPLHD 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01563 250 CDD SPX_AtSPX1_like 2 135 - -
Cca03g01563 250 PANTHER SPX DOMAIN-CONTAINING PROTEIN 1 1 248 - -
Cca03g01563 250 Pfam SPX domain 1 33 IPR004331 -
Cca03g01563 250 Pfam SPX domain 102 146 IPR004331 -
Cca03g01563 250 ProSiteProfiles SPX domain profile. 1 146 IPR004331 -
Cca03g01563 250 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 248 IPR031142 GO:0016036
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01563 Cca-Chr3 34354758 34356451 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01563 - - gmx:100499977 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01563 03 34354758 34356451 Cca03g01563 03 34354758 34356451 ECH