Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01562 ATGGTCCCTGCCATGTGCCTAACTTCCCCTAGAACTACACCACCACCAGAATGCTTAGGTATTGGTATAGAAAGCCATGCAAGTTCAAAGCATATTGGAGTGTTCCATGGCCCTCTAAATACCAAATATCGCTTTGTCATTGCAAAGGCTGCAAAAGGCAACCGAAACACAAAACCGAATAGTGTGATTTGTGCTGACTGTGATGGAAATGGAGCTGTTCTCTGCTCTCAATGCAAAGGTAGCGGGGTGAACTCTGTTGATGTTTTCGATGGACGGTTTAAAGCTGGTGACTCGTGTTGGCTTTGCGGAGGTAGGAAGGAGATGTTATGTGGGAATTGCAATGGAGCAGGCTTTGTTGGTGGCTTCTTGAGCACTTATGATCAGTAG 387 0.4599 MVPAMCLTSPRTTPPPECLGIGIESHASSKHIGVFHGPLNTKYRFVIAKAAKGNRNTKPNSVICADCDGNGAVLCSQCKGSGVNSVDVFDGRFKAGDSCWLCGGRKEMLCGNCNGAGFVGGFLSTYDQ 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01562 128 PANTHER PROTEIN BUNDLE SHEATH DEFECTIVE 2, CHLOROPLASTIC 26 122 - -
Cca03g01562 128 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 59 119 IPR036410 -
Cca03g01562 128 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN 26 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01562 Cca-Chr3 34353061 34356677 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01562 - - gmx:100306315 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01562 03 34353061 34356677 Cca03g01562 03 34353061 34356677 ECH