Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00598 ATGCAATCTGTTATTATATATAATTATTATCCTAAATGGTATTTTCATCACTCTCACTCCCTTTTTACCCGAAAAAAATTTGATTCTCTGCTAAGAAATTTCCCTTTTCAGAAACCCTTCAATCCCTTCCACTGCCTCCTCCGAACGCTTCTACAAACAGTAATGGGGGATACAAAGACTGAAGCGTACGAGGAGGACCTTCTTGACTATGAGGACGAAGAGGAGAAGGAGCCTGAAGGTGGTAATAAAGTCAACGGTGATGCTGTAAAGAAGGGTTATGTTGGAATTCATAGTTCAGGATTCAGAGACTTTTTGCTGAAGCCAGAGCTTCTTCGGGCTATTGTGGACTCTGGATTTGAGCACCCTTCTGAAGTGCAACATGAGTGCATACCTCAAGCTATACTTGGAATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTCTTTGTTCTATCTACCCTGCAGCAGATTGACCCTGTTGCGGGGCAAGTTTCCGCACTTGTCTTATGTCATACAAGGGAATTAGCATACCAGATATGCAACGAATTTGAAAGGTTTAGCACCTACCTACCCGAACTGAAGGTTGCTGTCTTTTATGGTGGCGTCAACATTAAAGTTCACAAGGATCTATTGAAGAATGAATGCCCCAGTATTGTTGTTGGTACACCTGGAAGAATACTTGGATTGGCAAGGGATAAGGACCTTTCTTTGAAGAATGTCAGGCATTTCATTTTAGATGAATGTGATAAGATGCTAGAATCTCTGGGCATGAGGAAAGATGTGCAAGCTATTTTCAAGATGACACCCCATGATAAGCAAGTTATGATGTTTTCCGCAACACTCAGCAAGGAAATACGTCCTGTCTGCAAAAAGTTTATGCAAGATCCAATGGAAATTTATGTTGATGACGAAGCAAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTAAAAGAGGAGGAGAAGAACAGGAAGTTAAACGACCTTCTTGACGCTCTGGACTTCAATCAAATTGTTATCTTTGTGAAAAGTGTTAGTAGAGCAGCGGAGCTGGACAAACTGCTCAGAGAGTGCAACTTCCCATCTATTTGCATTCACTCTGGAATGTCTCAGGAAGAAAGGTTAAAGCGATATAAAGGTTTTAAAGAGGGTCATACAAGAATTCTAGTTGCAACAGATTTGGTTGGCAGGGGAATCGATATCGAACGTGTGAATATAGTTATAAACTATGACATGCCAGATTCTGCTGATACATACTTGCACAGGGTTGGCCGTGCTGGAAGATTTGGAACCAAGGGCCTTGCAATTACATTTGTTTCATGTTCCACTGATGTTGATGTTCTCAACAATGTTCAATCGAGGTTTGAAGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACAGCTAGCTACATGCCATCTTAG 1443 0.4123 MQSVIIYNYYPKWYFHHSHSLFTRKKFDSLLRNFPFQKPFNPFHCLLRTLLQTVMGDTKTEAYEEDLLDYEDEEEKEPEGGNKVNGDAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICNEFERFSTYLPELKVAVFYGGVNIKVHKDLLKNECPSIVVGTPGRILGLARDKDLSLKNVRHFILDECDKMLESLGMRKDVQAIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSRAAELDKLLRECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTASYMPS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00598 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 450 IPR027417 -
Phco2g00598 480 FunFam DEAD-box ATP-dependent RNA helicase 56-like 87 305 - -
Phco2g00598 480 Gene3D - 312 479 IPR027417 -
Phco2g00598 480 CDD DEADc_DDX39 98 305 - -
Phco2g00598 480 SMART helicmild6 355 436 IPR001650 -
Phco2g00598 480 Pfam DEAD/DEAH box helicase 124 289 IPR011545 GO:0003676|GO:0005524
Phco2g00598 480 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 99 127 IPR014014 GO:0003724
Phco2g00598 480 CDD SF2_C_DEAD 316 445 - -
Phco2g00598 480 SMART ultradead3 118 319 IPR014001 -
Phco2g00598 480 Gene3D - 95 311 IPR027417 -
Phco2g00598 480 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 97 454 - -
Phco2g00598 480 FunFam DEAD-box ATP-dependent RNA helicase 312 480 - -
Phco2g00598 480 Pfam Helicase conserved C-terminal domain 329 436 IPR001650 -
Phco2g00598 480 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 315 476 IPR001650 -
Phco2g00598 480 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 303 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00598 Phco-Chr2 5839177 5848205 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00598 2 5839177 5848205 Phco2g00598 2 5839177 5848205 ECH
Phco7g00764 7 5932256 5941008 Phco2g00598 2 5839177 5848205 ECH
Phco2g00598 2 5839177 5848205 Phco7g00764 7 5932256 5941008 PCT