Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1169 ATGAAATTCGGAAAGAGTCTCAGCAACCAGATCGAGAAAACACTGCCTCAATGGCGCGACAAGTTTCTCTCCTACAAGGAACTGAAGAAGAAGTTGAAACTCGTGGAAGCCGCCCCCAAATCCTCGGAGGAACGCCCGGCCAAACGCGCAAGGCTCGATGCGGACATGTCCGTGGAGGAAATCGACTTCAGGAACTCGCTCGAACAAGAACTCCACAAATTCAACACCTTCTTCGAGGAGAAAGAGGAAGAGTGCATCATTAAATTGAAGGAGCTACAAGATAGGGTGGCCAAAGTAAAAGATTCTAATGAGCAGTTAATGGAAATTCGGAAGGAAATTGTGGATTTCCATGGAGAGATGGTCTTGCTCGAAAACTATAGTGCTCTTAACTACACAGGACTAGTGAAAATACTAAAGAAGTATGACAAGAGAACTGGTGCTCTCATTCGCTTGCCTTTCATTCAGAAGGTCTTGCAACAGCCTTTCTTCACCACTGACCTTCTCTACAAACTTGTGAAGGAGTGTGAAACAATGCTGGATCAGCTTTTCCCGGTGAATGATCCTTCGATTTCCGGTGAGGCAACTCCCCAAGCTGAGGGGTGTGAGGCTTCAACTTCAACCAGCACAAAGAATAATGAGGATCCACTGATGCCGAAAGAGTTAGCAGCCAACCAGCACATTGACGAGAGCCTCTACATGAAGAGTACCATTACAGCTTTACATGTTTTGCAGGAAATTAGAAAGGGAAGCTCAACAGTAAGCATGTTTTCATTGCCACCGCTGCAGATGAGTGGTTTGGAAGAAACATGGAACAAAATCCCAATTCTGGAACAGACAGCCAAGTAA 846 0.4563 MKFGKSLSNQIEKTLPQWRDKFLSYKELKKKLKLVEAAPKSSEERPAKRARLDADMSVEEIDFRNSLEQELHKFNTFFEEKEEECIIKLKELQDRVAKVKDSNEQLMEIRKEIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQKVLQQPFFTTDLLYKLVKECETMLDQLFPVNDPSISGEATPQAEGCEASTSTSTKNNEDPLMPKELAANQHIDESLYMKSTITALHVLQEIRKGSSTVSMFSLPPLQMSGLEETWNKIPILEQTAK* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1169 281 Coils Coil 89 109 - -
Vra3g1169 281 Pfam SPX domain 108 157 IPR004331 -
Vra3g1169 281 Pfam SPX domain 1 49 IPR004331 -
Vra3g1169 281 ProSiteProfiles SPX domain profile. 1 155 IPR004331 -
Vra3g1169 281 MobiDBLite consensus disorder prediction 189 216 - -
Vra3g1169 281 Coils Coil 64 84 - -
Vra3g1169 281 PANTHER SPX DOMAIN-CONTAINING PROTEIN 2 1 281 - -
Vra3g1169 281 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 281 IPR031142 GO:0016036
Vra3g1169 281 MobiDBLite consensus disorder prediction 189 214 - -
Vra3g1169 281 CDD SPX_AtSPX1_like 2 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1169 Vra-Chr3 12370884 12373959 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1169 - - gmx:100790400 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1169 3 12370884 12373959 Vra3g1169 3 12370884 12373959 ECH
Vra7g2253 7 42469324 42471988 Vra3g1169 3 12370884 12373959 PCT