Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0454 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0455 . . . . Adu08g02489 . . . . . . . . . . . . . . . Arst8g03436 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa5g04105 . . . . . . . . . . . . . Mepo3g07463 . Mesa9g05073 . . . . . Phac9g00431 . Phco7g00788 . . . . . . . . Pte1g02357 . . Pumo10g00049 . Pvu9g0984 . Rops10g01432 . Seca4g00922 . Spst9g00818 . . . . . . . Trre5g05268 . . . Vian4g01942 . Vifa2g04057 . Vimu10g02920 . Viun9g03033 . Vivi3g01286 . . .
Vvi4g0456 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0457 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja5g2155 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma14g01120 . . . Gso14g1032 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g0687 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0459 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal4g0229 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0460 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g0686 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0461 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0462 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0463 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal10g0013 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Lal Lal4g0229 Chr4 1440171 1441694 -
Vvi Vvi4g0454 Chr4 4091281 4092283 +
Vvi Vvi4g0455 Chr4 4124080 4132536 +
Adu Adu08g02489 Chr08 40846412 40847906 -
Arst Arst8g03436 Chr8 45219160 45226016 -
Lasa Lasa5g04105 Chr5 630453068 630454041 +
Mepo Mepo3g07463 Chr3 87990526 87991878 +
Mesa Mesa9g05073 Chr9 85270817 85271755 +
Phac Phac9g00431 Chr9 2717835 2719180 +
Phco Phco7g00788 Chr7 6119578 6120131 +
Pte Pte1g02357 Chr1 44363096 44365114 +
Pumo Pumo10g00049 Chr10 1085880 1090036 -
Pvu Pvu9g0984 Chr9 14769560 14770773 +
Rops Rops10g01432 Chr10 27439382 27443172 +
Seca Seca4g00922 Chr4 15088530 15090455 -
Spst Spst9g00818 Chr9 7108926 7109447 +
Trre Trre5g05268 Chr5 53683095 53684621 +
Vian Vian4g01942 Chr4 36046084 36046814 -
Vifa Vifa2g04057 Chr2 1189692129 1189692969 +
Vimu Vimu10g02920 Chr10 40281911 40282567 -
Viun Viun9g03033 Chr9 38093839 38094981 -
Vivi Vivi3g01286 Chr3 21280092 21283920 -
Vvi Vvi4g0456 Chr4 4133781 4133891 +
Vvi Vvi4g0457 Chr4 4134128 4146485 -
Lja Lja5g2155 Chr5 32263742 32269322 +
Vvi Vvi4g0458 Chr4 4149668 4155460 +
Gma Gma14g01120 Chr14 16545691 16548040 +
Gso Gso14g1032 Chr14 16400391 16402778 +
Psa Psa6g0687 Chr6 23295828 23298509 -
Vvi Vvi4g0459 Chr4 4158190 4159725 -
Lal Lal4g0229 Chr4 1440171 1441694 -
Vvi Vvi4g0460 Chr4 4166349 4177427 -
Psa Psa6g0686 Chr6 23266994 23276983 +
Vvi Vvi4g0461 Chr4 4177616 4184022 +
Vvi Vvi4g0462 Chr4 4186125 4189973 -
Vvi Vvi4g0463 Chr4 4190704 4193029 +
Lal Lal10g0013 Chr10 127896 130727 -
Adu Adu08g02489 Chr08 40846412 40847906 -
Arst Arst8g03436 Chr8 45219160 45226016 -
Lasa Lasa5g04105 Chr5 630453068 630454041 +
Mepo Mepo3g07463 Chr3 87990526 87991878 +
Mesa Mesa9g05073 Chr9 85270817 85271755 +
Phac Phac9g00431 Chr9 2717835 2719180 +
Phco Phco7g00788 Chr7 6119578 6120131 +
Pte Pte1g02357 Chr1 44363096 44365114 +
Pumo Pumo10g00049 Chr10 1085880 1090036 -
Pvu Pvu9g0984 Chr9 14769560 14770773 +
Rops Rops10g01432 Chr10 27439382 27443172 +
Seca Seca4g00922 Chr4 15088530 15090455 -
Spst Spst9g00818 Chr9 7108926 7109447 +
Trre Trre5g05268 Chr5 53683095 53684621 +
Vian Vian4g01942 Chr4 36046084 36046814 -
Vifa Vifa2g04057 Chr2 1189692129 1189692969 +
Vifa Vifa2g04057 Chr2 1189692129 1189692969 +
Vimu Vimu10g02920 Chr10 40281911 40282567 -
Viun Viun9g03033 Chr9 38093839 38094981 -
Vivi Vivi3g01286 Chr3 21280092 21283920 -