Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0457 ATGGCCACAGCAGTGACCGAGCTCAGTCAGTCTGGTCCAGCCATGGTCGGGGAGGTCTGCACCGCCAAAACGACGTCGTCTAAGCAAGGAGATGGGCTGAGGCAGTACTACCTCCAACACATCCACGATCTCCAGCTACAGGTTCGCCAGAAGAGCCATAATCTCAATCGCCTTGAAGCCCAGCGCAACGATCTCAATTCCCGAGTGAGGATGCTCAGAGAAGAATTGCAGCTGCTTCAAGAGCCTGGATCATATGTTGGTGAAGTAGTCAAAGTTATGGGAAAATCGAAGGTTTTGGTTAAGGTTCATCCAGAAGGGAAGTATGTTGTTGATATTGATAAGAACATAGACATCACTAAGATCACACCTTCAACCCGAGTTGCTCTTCGCAATGACAGCTATGTGCTTCACTTGATATTGCCCAGTAAAGTAGATCCACTGGTAAACCTTATGAAAGTTGAAAAAGTTCCGGATTCTACATATGATATGATTGGTGGTCTTGATCAGCAAATCAAAGAGATAAAGGAGGTTATTGAGCTTCCAATCAAGCATCCTGAATTATTTGAAAGTCTTGGTATAGCTCAACCAAAGGGAGTCCTGCTTTATGGTCCTCCTGGTACAGGGAAAACACTTCTTGCAAGGGCAGTGGCTCATCACACTGACTGTACCTTTATAAGGGTTTCTGGCTCTGAGTTAGTTCAGAAGTATATTGGTGAAGGGTCTCGAATGGTTAGAGAACTGTTTGTTATGGCAAGGGAGCATGCTCCATCAATCATCTTCATGGATGAAATTGACAGTATTGGATCTGCTCGAATGGAATCTGGAACTGGAAATGGTGATAGTGAAGTGCAGCGAACTATGTTGGAGCTTCTCAATCAACTGGATGGATTTGAAGCCTCAAACAAGATCAAGGTTTTGATGGCTACAAATCGCATTGATATTTTGGATCAAGCCCTCCTTAGGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTGCAGAGCTTAAGGCGGTATGCACAGAAGCTGGAATGTTTGCTCTAAGGGAGAGGAGAGTACATGTGACACAAGAAGATTTTGAGATGGCAGTGGCAAAGGTGATGAAAAAGGAGACAGAGAAAAACATGTCCTTGCGGAAGCTGTGGAAGTAA 1263 0.4442 MATAVTELSQSGPAMVGEVCTAKTTSSKQGDGLRQYYLQHIHDLQLQVRQKSHNLNRLEAQRNDLNSRVRMLREELQLLQEPGSYVGEVVKVMGKSKVLVKVHPEGKYVVDIDKNIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0457 420 Gene3D - 338 415 - -
Vvi4g0457 420 ProSitePatterns AAA-protein family signature. 303 321 IPR003960 GO:0005524|GO:0016887
Vvi4g0457 420 Gene3D - 152 333 IPR027417 -
Vvi4g0457 420 CDD RecA-like_PAN_like 160 331 - -
Vvi4g0457 420 Pfam ATPase family associated with various cellular activities (AAA) 199 332 IPR003959 GO:0005524|GO:0016887
Vvi4g0457 420 FunFam 26S protease regulatory subunit 8 152 333 - -
Vvi4g0457 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 409 IPR027417 -
Vvi4g0457 420 FunFam 26S protease regulatory subunit 8 338 415 - -
Vvi4g0457 420 Pfam AAA+ lid domain 356 398 IPR041569 -
Vvi4g0457 420 Pfam Proteasomal ATPase OB C-terminal domain 86 141 IPR032501 -
Vvi4g0457 420 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 35 412 - -
Vvi4g0457 420 Gene3D - 48 151 IPR012340 -
Vvi4g0457 420 FunFam 26S protease regulatory subunit 8 47 151 - -
Vvi4g0457 420 SMART AAA_5 195 335 IPR003593 GO:0016887
Vvi4g0457 420 Coils Coil 41 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0457 Vvi-Chr4 4134128 4146485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0457 160 416 Miscellaneous Gene Families AT5G58870 40.927 6.43e-56 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0457 K03066 - vvi:100254376 805.823