Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0460 ATGTCTTCACGCGCCACTTATCGAAGTAGTCGAAACCGATGGAGGCGAGGGTTTTCGAACCGGTCAGACGCCGGCGAGAGCGGCGAGTTAGTGACCGGAGACTCACATTTCCGGTCGGTGAGAGACGCGAACCTAGGGTTGCGGCAAGGAGAGAGGAGGAACTTTAACGAGAGTGGGTTTCAGCCCCAATCTTACAATCCAAGACAACCTTTTCCTCGAAATCAACCGTTCCGGAGGCCTCCACCGTTCAATCCAAATCAACCATTTCGGCAGTCACCTGCGTTCAATCCAAACCAACCGTTCCAGCAGCCTCCACCGTTCAACCCAAATCAACGTTTCCGTCAACCTCCGCCATTCAACCCAAATCAACCTTTCAATCAAAATCACCGCTTCCAGCAACCTCAGCAGTTCCAGCCACGGCCAACTAGGCCCTTGGATTATCGGAACTGGGAGTATTCTGAAGCAGGACCTTCTTCTCACTGTGAGCGGTTTACAGTTCTCTCATATAATATTCTGGCTGATTATCTTGCTGTCAACCAACGAAGCAGACTTTACTTTCACATACCTCGCCATATGTTGGACTGGGAATGGCGAAAGAGAAATATAATTTTCGAGCTTGGACTGTGGTCTGCTGATGTTATGTGCTTTCAGGAGGTAGATAGATTTGGTGACTTGGAGGAGGAATTGAAGCTCCGAGGATACACTGGCATTTGGAAGATGCGAACTGGTGATCCAGTGGATGGCTGTGCTATCTTTTGGCGAGCATCAAGATTTAAGTTGTTGCACGAGGAATGCATTGAATTCAATAAGCTCGGACTCCGAGATAATGTTGCTCAGATTTGTGTCCTGGAGTCAATTAATCAGAATTATAGTTGGAGTACGTCAGCTCTACCTGCAAGCTCAACAGGTTCTAATAAGGTTGTTATCTGCAACATTCATGTGCTTTACAATCCTAGAAGAGGAGAGATCAAGCTTGGGCAGGTTAGGGCACTCCTCGATAAGGCTCATGCTGTTTCTAAGATTTGGAATGATGCTCCTATTGTTATTTGTGGGGATTTCAACTGTACTCCGAAGAGTCCTTTATACAATTTTATATCTGAACAGAAGTTAGATTTGTCAGGACTGGATAGGGATAAGGTATCAGGACAAGCTTCTGCTGAAATTCGTGCACCAAGGCAATTTAGCCCAAATCCCAGGATCCAGTTGACTGATAATTCAGCACAAGGTCTAACTATGAATGATGTAAGGGAAGTTGGTGCTAAGGACTCTGATTCCCTCTTAGAAATTCAGAAGCAGACTTATCCAGATAGCAATGTGGGAAATGTAGCTTCTATGGATAACTTGTCTCAGGCTCAATGTATTAACACAGTGTTGCATGTTGACAAATCTTGCACTAATGGCCAACATGAGAATGATACAAGGGCACCATCTGATGAAATGATAAAAGAAACTCAGCAGGAGAAGGTAGGTGGCTTTGAGAATGAAACTGAACCAACTGCCTATGATCCAGTTGATGATTCAAAGGAAAATCAAAGTATTTCCCTTATTGAAGGTGAGGCTGTTGTTGACCAGGTGAATGGTGGGATTTGGGAAAATACTCCTCCAGCAGCTTCTCTTCATGAAGAGACTTACTCTTCTGATATGATTGAGAGGAGACAGGGAGAAAGAATTACTGTCATCTCTAATCCTGTCCATCAGTTTTTTAGTGAACATTCTCAACCAGGTGTTGATGATGAGAAGGATACCCCCTCAACCCCATATGAAATTAACATCTCTGATGCATCTACCAGCTTTGATATTGTGCTGGATAAACAGCTGGAGAATTTAACACTTGATGAGGCAGATGAAGACACAGAGGAAAATGGAAATTTAGGTGAAGATTGTAGCACATTTTTATCTGAATTGAACAAGACAGAAGAGACATTTCCATCAGACTTTGGTCAATCTGTGAGAAGTGACCAAATTCTGGATGATTTTTCTCCAAGCATAGAGCCTGAGCCTTTTGAAATGGAGATATCTGCATATGATCCTTCGGTATGGACTCCGATGGAAATAGAAACTGCAACAGGTAATGCGGACTGCACACATCTGGAGCACCCTCTAAAGCTGAAAAGCACATATACAGAAGTGGAGGATCGTTCTGGGACAAAAGACTCAAATGGAGAACCCTTAGTTACCAGTTACAACAGGTGCTTTTTGGGCACAGTTGATTATATTTGGCGATCTGAAGGTCTCAAAACTATCAGAGCGCTTGCTCCAATACCAAAACAGGCTATGCAATGGACTCCAGGCTTCCCAACTAAGAAATGGGGCAGCGATCATATTGCCTTGGCAACAGAATTGGCTTTCACAAAGGATTGA 2361 0.4405 MSSRATYRSSRNRWRRGFSNRSDAGESGELVTGDSHFRSVRDANLGLRQGERRNFNESGFQPQSYNPRQPFPRNQPFRRPPPFNPNQPFRQSPAFNPNQPFQQPPPFNPNQRFRQPPPFNPNQPFNQNHRFQQPQQFQPRPTRPLDYRNWEYSEAGPSSHCERFTVLSYNILADYLAVNQRSRLYFHIPRHMLDWEWRKRNIIFELGLWSADVMCFQEVDRFGDLEEELKLRGYTGIWKMRTGDPVDGCAIFWRASRFKLLHEECIEFNKLGLRDNVAQICVLESINQNYSWSTSALPASSTGSNKVVICNIHVLYNPRRGEIKLGQVRALLDKAHAVSKIWNDAPIVICGDFNCTPKSPLYNFISEQKLDLSGLDRDKVSGQASAEIRAPRQFSPNPRIQLTDNSAQGLTMNDVREVGAKDSDSLLEIQKQTYPDSNVGNVASMDNLSQAQCINTVLHVDKSCTNGQHENDTRAPSDEMIKETQQEKVGGFENETEPTAYDPVDDSKENQSISLIEGEAVVDQVNGGIWENTPPAASLHEETYSSDMIERRQGERITVISNPVHQFFSEHSQPGVDDEKDTPSTPYEINISDASTSFDIVLDKQLENLTLDEADEDTEENGNLGEDCSTFLSELNKTEETFPSDFGQSVRSDQILDDFSPSIEPEPFEMEISAYDPSVWTPMEIETATGNADCTHLEHPLKLKSTYTEVEDRSGTKDSNGEPLVTSYNRCFLGTVDYIWRSEGLKTIRALAPIPKQAMQWTPGFPTKKWGSDHIALATELAFTKD* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0460 786 MobiDBLite consensus disorder prediction 73 88 - -
Vvi4g0460 786 Gene3D Endonuclease/exonuclease/phosphatase 136 426 IPR036691 -
Vvi4g0460 786 Gene3D Endonuclease/exonuclease/phosphatase 604 786 IPR036691 -
Vvi4g0460 786 FunFam Carbon catabolite repressor protein 4 homolog 6 137 470 - -
Vvi4g0460 786 SUPERFAMILY DNase I-like 158 371 IPR036691 -
Vvi4g0460 786 MobiDBLite consensus disorder prediction 54 71 - -
Vvi4g0460 786 Pfam Endonuclease/Exonuclease/phosphatase family 167 774 IPR005135 GO:0003824
Vvi4g0460 786 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 138 783 - -
Vvi4g0460 786 MobiDBLite consensus disorder prediction 98 123 - -
Vvi4g0460 786 MobiDBLite consensus disorder prediction 1 142 - -
Vvi4g0460 786 MobiDBLite consensus disorder prediction 124 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0460 Vvi-Chr4 4166349 4177427 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0460 226 368 EF-hand Containing Proteins AT1G02270 26.490 7.13e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0460 - - vvi:100254276 1459.51