Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02920 ATGCTTGACGCCGTTATGCTGACCAATGACCACAATTCTGTATGCCGACTTTTAGCCCTAATCATAATTTATTACTACAAATGCGTTCAACAACTTGGCCTAAAATTTTCGAAATTCCTTAATTTATTTTATGCAGCTTCAATGTCTTCAGCTTCCTCCCTCCGCCTGATCCTCTGCACTCTCTTCCTCTCCTCACTCTTCCTCCGCCACTCTGTCGCCGACGTCGGCACCGCTGCACACTATGGCCCTCCCTTTTTGCCCACTGCATGCTACGGCAGAGACGCGTCACAGTTTCCGTCGAATAACTTCTTCGGTGCCGTCGGGGAGGGTTTATGGGACAATGGAGCAGCATGTGGGAGGCAGTATCAGGTGCGGTGCATCAGCGCTGAGGCTCGCGGAACTTGCATTCCTGGCCAGATGATTCAGATCAAGATCGTTGATCGAGCGCAGTCATCGGTTTCTAGGCCTTCTTTAGCTGGAACTACGTTGGTCCTCTCCTCGAAGGCCTTTCAGGTCATCGCCAACGCTTCTGCACCGTTCATTAACGTAGAATACCAACAGTGA 564 0.5053 MLDAVMLTNDHNSVCRLLALIIIYYYKCVQQLGLKFSKFLNLFYAASMSSASSLRLILCTLFLSSLFLRHSVADVGTAAHYGPPFLPTACYGRDASQFPSNNFFGAVGEGLWDNGAACGRQYQVRCISAEARGTCIPGQMIQIKIVDRAQSSVSRPSLAGTTLVLSSKAFQVIANASAPFINVEYQQ 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02920 187 Gene3D - 73 187 IPR036908 -
Vimu10g02920 187 Pfam Lytic transglycolase 110 185 IPR009009 -
Vimu10g02920 187 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 52 186 - -
Vimu10g02920 187 CDD DPBB_EG45-like 74 186 - -
Vimu10g02920 187 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 76 187 IPR007112 -
Vimu10g02920 187 SUPERFAMILY Barwin-like endoglucanases 62 187 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02920 Vimu-Chr10 40281911 40282567 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02920 - - ccaj:109790666 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02920 10 40281911 40282567 Vimu10g02920 10 40281911 40282567 ECH