Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0459 ATGTCGGAAACAAATCCAAACACACCCTTGATTCCACCATCGCCATCCCGAAAGCTTCCCGATTTCAAAAAGTCTGTGAAATTGAAATACGTGAAACTTGGCTACCATTACCTCATTACCCATGGCATGTACCTTTTCCTATCGCCTCTCATTGTCCTCATTGCTGCCCAGCTCTCCACATTCTCTCTCCAAGATCTCCATGATCTCTGGGAAAATCTTAAATTCAATCTCATTTCAGTGATCCTTTGCTCGGCTCTCCTTGTCTTTTTATCGACCCTCTTTGTCCTTACTCGTCCTCGCCCTGTTTATCTAGTTGATTTCTCGTGCTATAAGCCTGATGATGCTAGGAAATGTTCTAGGCAGATTTTCATGGATCGGTCCAAGCAGATTGGTTCATTTACAGAGGAAAATATTGAGTTTCAAAAGAAAATTATCGAGAGATCAGGGCTTGGGGAGTCAACTTACCTCCCTGAGGCTGTTATCAATGTTCCACCAAATCCATCAATGGCAGAAGCCAGAAAAGAAGCTGAGATGGTGATGTTTGGGGCACTTGATCAGCTTTTTGAAAAGACGATGGTGAAACCGAAAGATATTGGGATTTTGATTGTGAATTGTAGTTTGTTTAATCCGACTCCGTCTCTTTCAGCAATGGTCATTAACCATTATAAGCTTCGAGGGAATATTATTAGCTATAATCTAGGTGGGATGGGCTGTAGTGCTGGTTTGATATCAATTGATCTTGCCAAAAATCTCCTTCAAGTTCATCCTAATTCCTATGCTTTGGTCATTAGCATGGAAAACATCACTTTGAATTGGTACTTTGGGAATGAGAGGTCAATGCTTGTTTCAAATTGTTTGTTCAGAATGGGGGGTGCTGCCATTTTGCTTTCAAACAAGTGGTCTGACAGGCGACGATCCAAGTATCAGTTGGTTCATACTGTTCGAACCCACAAAGGTTCTGATGATAAGTGTTTTGCTTGTGTTACCCAAAAGGAGGATTCCAATGGGAAGATCGGAGTGTCTTTGTCGAAGGATTTGATGGCTGTTGCTGGAGATGCTTTGAAGACTAATATCACTACCTTGGGTCCTCTTGTGCTGCCGATGTCTGAACAGCTGCTTTTCTTTGCCACATTGGTAGGGAAAAAGGTTTTCAAGATGAAGGTGAAGCCCTATATTCCAGACTTCAAACTGGCTTTCGAGCATTTTTGCATTCATGCTGGAGGAAGAGCTGTGCTGGATGAATTAGAGAAAAACTTGCAGCTTTCGGATTGGCATATGGAACCTTCGAGGATGACCCTCTACCGGTTTGGCAACACTTCAAGCAGCTCTCTTTGGTATGAATTGGCTTATACAGAAGCCAAAGGGAGGGTGAAGAAGGGAGACAGAACATGGCAGATAGCATTTGGCTCTGGATTCAAATGTAACAGTGCAATTTGGAAGGCTCTTCGGACTGTGAATCCAGCAAAGGAGAAGAACCCATGGATGGATGAGATACACTGGTTCCCAGTGGATGTTCCAATGGTCTCAACCCTCTAG 1536 0.4316 MSETNPNTPLIPPSPSRKLPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLIVLIAAQLSTFSLQDLHDLWENLKFNLISVILCSALLVFLSTLFVLTRPRPVYLVDFSCYKPDDARKCSRQIFMDRSKQIGSFTEENIEFQKKIIERSGLGESTYLPEAVINVPPNPSMAEARKEAEMVMFGALDQLFEKTMVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLAKNLLQVHPNSYALVISMENITLNWYFGNERSMLVSNCLFRMGGAAILLSNKWSDRRRSKYQLVHTVRTHKGSDDKCFACVTQKEDSNGKIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKVFKMKVKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRVKKGDRTWQIAFGSGFKCNSAIWKALRTVNPAKEKNPWMDEIHWFPVDVPMVSTL* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0459 511 PANTHER 3-KETOACYL-COA SYNTHASE 71 504 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi4g0459 511 PIRSF Very_long_ch_3-ktacl-CoA_syn 21 511 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi4g0459 511 Pfam FAE1/Type III polyketide synthase-like protein 96 383 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vvi4g0459 511 CDD CHS_like 84 479 - -
Vvi4g0459 511 SUPERFAMILY Thiolase-like 88 306 IPR016039 GO:0016746
Vvi4g0459 511 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 400 480 IPR013747 -
Vvi4g0459 511 SUPERFAMILY Thiolase-like 287 483 IPR016039 GO:0016746
Vvi4g0459 511 FunFam 3-ketoacyl-CoA synthase 112 481 - -
Vvi4g0459 511 Gene3D - 106 481 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0459 Vvi-Chr4 4158190 4159725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0459 9 511 Miscellaneous Gene Families AT2G26640 82.306 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0459 K15397 - vvi:100259490 1030.78