Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00922 ATGTACAGCGTTGACTTTGGCGCTTATGTATGTCTAGAAAGTTTTATAATTAGCATTTTGCCCTCACTATTTCTTCAATTCCTTAATTTGCACTTTGCAGCAATGTCATCTATGGCTCATCTTTGCTTCCAACGCCTAATCCTCTTCTGTCTCATCCTCCCAACATTGTTCATTCCTTACTCCCAAGCTGATGTTGGCACCGCTGCCCAATATGGCCCTCCCTATTTACCCACAGCATGTTTTGGCGGAGATGCATCTCAATTCCCATCAAGCAACATGTTTGGTTCAGCAGGTGAAGGTATTTGGGACAATGGTGCAGCGTGTGGGAGGCAGTATCAAGTGAGATGCATCAGCGCAGCTGCTCCTAGAACTTGCATTCCTGGCCAGATGATTCAGATTAAGATTGTTGATAGGGCACAGTCCTCTGTTTCTAGGCCTTCTGCAAGGGACACTTCTATGGTCCTCTCTACCACTGCTTTTCAGGCCATAGCTAATGCTTCTGCGTCCTTAATTAACATTGAATTCCAGCAGGTTTGA 537 0.4525 MYSVDFGAYVCLESFIISILPSLFLQFLNLHFAAMSSMAHLCFQRLILFCLILPTLFIPYSQADVGTAAQYGPPYLPTACFGGDASQFPSSNMFGSAGEGIWDNGAACGRQYQVRCISAAAPRTCIPGQMIQIKIVDRAQSSVSRPSARDTSMVLSTTAFQAIANASASLINIEFQQV. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00922 178 CDD DPBB_EG45-like 64 176 - -
Seca4g00922 178 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 77 178 IPR007112 -
Seca4g00922 178 Pfam Lytic transglycolase 101 174 IPR009009 -
Seca4g00922 178 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 44 177 - -
Seca4g00922 178 SUPERFAMILY Barwin-like endoglucanases 53 178 IPR036908 -
Seca4g00922 178 Gene3D - 62 178 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00922 Seca-Chr4 15088530 15090455 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00922 - - lja:Lj1g3v1914930.1 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00922 4 15088530 15090455 Seca4g00922 4 15088530 15090455 ECH