Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0687 ATGTCGGGGAAAGGAGCGAAGGGTTTGACAACTGGTAAAACCCCATCATCCCTCAAAGACAAGGACAAGAAGAAACCCACTTCTCGTTCCTCCAGAGCTGGTCTTCAGTTCCCTGTTGGTCGTATCCATCGTCTTCTGAAGTCAAGGACAATGGCGCACGGAAGAGTCGGGGCAACAGCTGCAGTTTATTCCGCTGCTATCCTGGAGTACTTAACCGCAGAGGTGCTGGAGTTGGCTGGTAACGCAAGCAAGGATCTGAAGGTGAAGCGTATTACACCAAGACATCTACAGCTTGCTATCCGTGGAGACGAAGAACTCGACACTCTCATCAAAGGAACAATTGCCGGAGGTGGTGTTATTCCTCATATCCACAAGTCTCTTATCAACAAGTCCTCAAAGGAATGA 405 0.4914 MSGKGAKGLTTGKTPSSLKDKDKKKPTSRSSRAGLQFPVGRIHRLLKSRTMAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0687 134 CDD H2A 26 130 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa6g0687 134 Pfam Core histone H2A/H2B/H3/H4 15 102 IPR007125 GO:0003677
Psa6g0687 134 SMART h2a4 14 134 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa6g0687 134 ProSitePatterns Histone H2A signature. 33 39 IPR032458 -
Psa6g0687 134 SUPERFAMILY Histone-fold 4 111 IPR009072 GO:0046982
Psa6g0687 134 PANTHER HISTONE H2A 2 133 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa6g0687 134 PANTHER HISTONE H2A 2 133 - -
Psa6g0687 134 Pfam C-terminus of histone H2A 104 133 IPR032454 -
Psa6g0687 134 Gene3D Histone, subunit A 15 134 IPR009072 GO:0046982
Psa6g0687 134 MobiDBLite consensus disorder prediction 1 34 - -
Psa6g0687 134 PRINTS Histone H2A signature 25 47 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa6g0687 134 PRINTS Histone H2A signature 55 70 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa6g0687 134 PRINTS Histone H2A signature 70 83 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa6g0687 134 PRINTS Histone H2A signature 84 98 IPR002119 GO:0000786|GO:0003677|GO:0030527
Psa6g0687 134 PRINTS Histone H2A signature 111 129 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0687 Psa-Chr6 23295828 23298509 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0687 K11251 - pop:7459008 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0687 6 23295828 23298509 Psa6g0687 6 23295828 23298509 ECH