Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi4g0455 | ATGAATGCAGCCACAGCCTGTTCAGGAAACGATCCATCCCCGTTCCCATCAAGCAACTTATTTGCAGCAGCGGGGGAGGGAGCGTGGGACAATGGAGCAGCTTGTGGGAGGCAATACCGGGTTAGGTGCATAAGCGCTCCAACTCCAGGGACATGCAAAGCTGATCAGAGTATTATAGTGAAGATTGTTGATAGAGCCCAAACCACTGTGTCTAGACCTTCTAGGGATGGTGCCGTCCTCGTCCTTTCTACTACTGCATTTGGGGCTATTGCTAATCCTTCTGCTGCTTGGGTTAACGTAGAGTTTGCCCAGATGTCTACCTCTCCACATGAACTACACCTCCAATTATTGGCCTTGCTCTTCATATTAGCAGGGCTTGTTCATATCTGTTCAGGAGATGTTGGCACAGCAGGCCAATATGCTCCCCCATATCTGCCAACTGCCTGCTATGGAAACGATGTGTCTGAGTTCCCATCAAGCAACTTCTTCGCGTCGGCCGGAGAGGGGATATGGGACAATGGGGCAGCTTGTGGGAGGCAGTACCTGGTGAGGTGCATAAGCGCAGTGGTGCCCATGACATGCATAGCAGGGCAGACCATTCAGATTAAGATCGTTGATAGAGCGGTTACATCGGTGTCTAGGCCTTCAAGGAATGGTGCAACCATGGTGCTTTCCACCACTGCATTTGGGGCTGTGGCTAATGCTTCTGCATCATCCATTAACATAGAGTTTCAACAGGTCTGA | 744 | 0.5067 | MNAATACSGNDPSPFPSSNLFAAAGEGAWDNGAACGRQYRVRCISAPTPGTCKADQSIIVKIVDRAQTTVSRPSRDGAVLVLSTTAFGAIANPSAAWVNVEFAQMSTSPHELHLQLLALLFILAGLVHICSGDVGTAGQYAPPYLPTACYGNDVSEFPSSNFFASAGEGIWDNGAACGRQYLVRCISAVVPMTCIAGQTIQIKIVDRAVTSVSRPSRNGATMVLSTTAFGAVANASASSINIEFQQV* | 248 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi4g0455 | 247 | Pfam | Lytic transglycolase | 28 | 102 | IPR009009 | - | |
| Vvi4g0455 | 247 | Pfam | Lytic transglycolase | 170 | 243 | IPR009009 | - | |
| Vvi4g0455 | 247 | SUPERFAMILY | Barwin-like endoglucanases | 7 | 105 | IPR036908 | - | |
| Vvi4g0455 | 247 | CDD | DPBB_EG45-like | 133 | 245 | - | - | |
| Vvi4g0455 | 247 | CDD | DPBB_EG45-like | 4 | 102 | - | - | |
| Vvi4g0455 | 247 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 146 | 247 | IPR007112 | - | |
| Vvi4g0455 | 247 | PANTHER | EG45-LIKE DOMAIN CONTAINING PROTEIN | 116 | 246 | - | - | |
| Vvi4g0455 | 247 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 4 | 105 | IPR007112 | - | |
| Vvi4g0455 | 247 | SUPERFAMILY | Barwin-like endoglucanases | 119 | 247 | IPR036908 | - | |
| Vvi4g0455 | 247 | Gene3D | - | 133 | 247 | IPR036908 | - | |
| Vvi4g0455 | 247 | Gene3D | - | 1 | 105 | IPR036908 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi4g0455 | Vvi-Chr4 | 4124080 | 4132536 | Dispersed/Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi4g0455 | - | - | vvi:100259398 | 268.855 |