Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0458 ATGTCAGGAAAAGGTGCTAAAGGTCTGATTATGGGGAAATCCCCAGCACTCAACAAGGACAAGGACAAGAAGAAGCCCGTTTCTCGTTCCTCTCGTGCTGGTCTCCAGTTCCCAGTTGGCCGCATCCACCGACTTCTGAAGTCAAGGGTCACAGCAAATGGAAGAGTTGGAGCAACAGCAGCTGTGTACTCAGCAGCCATCTTAGAGTATCTAACAGCAGAAGTATTGGAGCTGGCCGGTAACGCAAGCAAGGATCTGAAGGTGAAACGTATCACACCCAGGCATTTGCAGCTTGCAATTAGGGGAGATGAAGAACTTGACACCCTAATTAAAGGAACCATAGCTGGTGGTGGTGTGATTCCTCACATTCACAAATCTCTCATCAACAAATCCTCCAAGGACTGA 405 0.484 MSGKGAKGLIMGKSPALNKDKDKKKPVSRSSRAGLQFPVGRIHRLLKSRVTANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKD* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0458 134 Gene3D Histone, subunit A 15 134 IPR009072 GO:0046982
Vvi4g0458 134 CDD H2A 18 130 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi4g0458 134 SMART h2a4 15 134 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi4g0458 134 Pfam Core histone H2A/H2B/H3/H4 18 102 IPR007125 GO:0003677
Vvi4g0458 134 ProSitePatterns Histone H2A signature. 33 39 IPR032458 -
Vvi4g0458 134 FunFam Histone H2A 15 134 - -
Vvi4g0458 134 PANTHER HISTONE H2A 20 130 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi4g0458 134 Pfam C-terminus of histone H2A 104 133 IPR032454 -
Vvi4g0458 134 PRINTS Histone H2A signature 55 70 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi4g0458 134 PRINTS Histone H2A signature 25 47 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi4g0458 134 PRINTS Histone H2A signature 70 83 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi4g0458 134 PRINTS Histone H2A signature 111 129 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi4g0458 134 PRINTS Histone H2A signature 84 98 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vvi4g0458 134 MobiDBLite consensus disorder prediction 1 35 - -
Vvi4g0458 134 SUPERFAMILY Histone-fold 4 111 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0458 Vvi-Chr4 4149668 4155460 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0458 K11251 - vvi:100249276 259.996