Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04057 ATGTCTTTCTTCCAATTTCTAATGATTATCCTCTTCTCATCATTGTTCATCCACTTCTCTCAAGCTGACGTTGGCACTGCTTCCCACTATGGTCCTCCCTTTTTACCGACGGAGTGTTTCGGGGGAGGTGGGTCGCAATTTCCGTCTACCAACATGTTTGGTTCAGCTGGAGAGGGTATATGGGACAATGGTGCAGCATGTGGGAGGCTGTACGAGGTGAGATGCATCAGTGCAGCTGTTCCAAGAACTTGCATTCCTGGTCAAACGGTTCTGATTAAGATTGTTGACAGAGCACGATCCTCTGTTTCAAGGCCTTCAAAGGATGATACTTCCATGGTTCTTTCCACCACTGCTTTTGAAGTCATTGCAAATGTTTCTTCACCATTGATTAACATTGAATTTCAACTGGTTTGA 414 0.4493 MSFFQFLMIILFSSLFIHFSQADVGTASHYGPPFLPTECFGGGGSQFPSTNMFGSAGEGIWDNGAACGRLYEVRCISAAVPRTCIPGQTVLIKIVDRARSSVSRPSKDDTSMVLSTTAFEVIANVSSPLINIEFQLV 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04057 137 Pfam Lytic transglycolase 60 133 IPR009009 -
Vifa2g04057 137 CDD DPBB_EG45-like 23 135 - -
Vifa2g04057 137 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 25 137 IPR007112 -
Vifa2g04057 137 Gene3D - 20 137 IPR036908 -
Vifa2g04057 137 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 6 135 - -
Vifa2g04057 137 SUPERFAMILY Barwin-like endoglucanases 21 137 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04057 Vifa-Chr2 1189692129 1189692969 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04057 - - gmx:100803494 201.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04057 2 1189692129 1189692969 Vifa2g04057 2 1189692129 1189692969 ECH