Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01942 ATGACCACAGTTATGTATGCTGACTTTGTAGCCCTAATTATAATTTATTACTACAAATGTGTTCAACAACTTGGCCTAAAATTTTCGAGATTCCTTAATTTATTTTATGCAGCTTCGATGTCTTCCACTTCCTCCCTTCGCCTGATCCTCTGCACTCTCTTCCTCTCCTCACTCTTCCTCCGCCACTCTCTCGCCGACGTCGGCACGGCTGCACGTTATGGCCCTCCCTTTTTGCCCACTGCATGCTACGGCAGAGACGCGTCACAGTTTCCGTCGAATAACTTCTTCGGTGCCGTGGGGGAGGGTTTATGGGACAATGGAGCAGCATGTGGAAGGCAGTATCAGGTGCGGTGCATCAGCGCTGCGGCTCGCGGAACTTGCATTCCTGGCCAGATGATTCAGATCAAGATCGTTGATCGAGCGCAATCATCGGTTTCTAGGCCTTCTTTAGCTGGAACTACGTTGGTCCTCTCCTCCAAGGCCTTTCAGGTCATCGCCAACGCTTCTGCACCGTTCATTAACGTAGAATACCAACAGTGA 540 0.5 MTTVMYADFVALIIIYYYKCVQQLGLKFSRFLNLFYAASMSSTSSLRLILCTLFLSSLFLRHSLADVGTAARYGPPFLPTACYGRDASQFPSNNFFGAVGEGLWDNGAACGRQYQVRCISAAARGTCIPGQMIQIKIVDRAQSSVSRPSLAGTTLVLSSKAFQVIANASAPFINVEYQQ 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01942 179 Gene3D - 66 179 IPR036908 -
Vian4g01942 179 CDD DPBB_EG45-like 66 178 - -
Vian4g01942 179 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 179 IPR007112 -
Vian4g01942 179 SUPERFAMILY Barwin-like endoglucanases 54 179 IPR036908 -
Vian4g01942 179 Pfam Lytic transglycolase 102 177 IPR009009 -
Vian4g01942 179 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 43 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01942 Vian-Chr4 36046084 36046814 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01942 - - ccaj:109790666 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01942 4 36046084 36046814 Vian4g01942 4 36046084 36046814 ECH