Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0229 ATGTCAGAATCCAATCCAAAATCTCCATTGATCAAATCAAAGATTCCTGATTTCAAACAATCTGTGAAACTTAAATATGTGAAATTAGGCTATCATTACCTAATTACCCATGCAATGTTCTTGTTTTTATTACCTCTTGTAGCTATAATTGTAGCCCATCTATCTACATTTTCACTCCAAGATCTTCATGATCTCTGGCACCATCTTCGTTACAATCTCATATCTGTGATCATTTGCTCAGCCCTCCTTGTGTTCTTGTTGACCCTCTATTTCCTAACCTGCGCTCGACCTGTTTACCTTGTCGATTTCTCTTGCTACAAACCAGAGGATGCACGCAAATGCACGAGGCAGATATTCATGGATCGGTCAAGTTCGACAGGAACTTTCACCGAGGGAAGCCTCGAGTTCCAGCGGAAGATTCTGGAAAGATCTGGACTTGGTGAGTCATCTTACCTCCCTGAAGCTGTTTTAAGAGTTCCTCCAAATCCATCAATGGCAGAAGCCAGGAAGGAAGCTGAGGCTGTTATGTTTGGTGCAATTGATGAGCTGTTCGATAAGACAAAGGTGAAGCCTAAGGACATTGGAATTCTGATTGTGAATTGTAGTTTGTTTAATCCAACACCATCCTTGTCTGCTATGGTTATCAATCATTATAAGCTTCGCGGGAACGTTCTTAGTTTCAATCTAGGTGGCATGGGATGCAGTGCTGGTTTGATTTCTATTGATCTTGCCAAGGATCTTCTTCAGGTCCATCCGAATTCTTATGCACTAGTCATTAGCATGGAGAATATCACCTTGAACTGGTATTTTGGGAATGATAAGTCCATGTTACTTTCGAATTGTTTGTTTAGGATGGGAGGAGCTGCAATCTTGCTATCTAACCGAAGACGGGATAAGCGTCGATCCAAGTATCAATTGGTGCACACAGTTAGGACTAACAAAGGCGCCGATGACAAGTGTTTTTCTTGTGTTACACAGAAAGAGGATTCCACAGGGAGGGTTGGTGTATCTTTGTCAAAGGATCTCATGGCAGTTGCTGGTGATGCTTTGAAGACCAACATCACTACTTTAGGTCCTCTTGTGTTGCCAATGTCAGAACAATTGCTATTTTTCGCTACATTGGTTGGGAAGAAACTTTTCAAGATGAAGGTGAAACCTTATATCCCTGATTTTAAGTTGGCCTTTGAACATTTCTGTATTCATGCTGGTGGAAGAGCTGTGCTAGATGAATTAGAGAAGAATCTTCAACTCACAGATTGGCACATGGAACCTTCAAGAATGACCCTTTACAGGTTTGGCAACACTTCAAGTAGTTCACTTTGGTTTGAATTGGCTTACACTGAAGCCAAAGGAAGGATCAGCAAGGGTCATAGGTTATGGCAAATTGCATTTGGATCAGGATTCAAGTGCAATAGTGCAGTTTGGAAGGCTCTTAGAAAGGTGAATCCAGCAAAGGAGAATAATCCATGGATTGATGAAATTGATCAATTTCCAGTTCATGTTCCAAAGTTCTCAGCTATCTAG 1524 0.4127 MSESNPKSPLIKSKIPDFKQSVKLKYVKLGYHYLITHAMFLFLLPLVAIIVAHLSTFSLQDLHDLWHHLRYNLISVIICSALLVFLLTLYFLTCARPVYLVDFSCYKPEDARKCTRQIFMDRSSSTGTFTEGSLEFQRKILERSGLGESSYLPEAVLRVPPNPSMAEARKEAEAVMFGAIDELFDKTKVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNVLSFNLGGMGCSAGLISIDLAKDLLQVHPNSYALVISMENITLNWYFGNDKSMLLSNCLFRMGGAAILLSNRRRDKRRSKYQLVHTVRTNKGADDKCFSCVTQKEDSTGRVGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKVKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLTDWHMEPSRMTLYRFGNTSSSSLWFELAYTEAKGRISKGHRLWQIAFGSGFKCNSAVWKALRKVNPAKENNPWIDEIDQFPVHVPKFSAI 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0229 507 PIRSF Very_long_ch_3-ktacl-CoA_syn 17 507 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lal4g0229 507 PANTHER 3-KETOACYL-COA SYNTHASE 8 506 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lal4g0229 507 Gene3D - 110 477 IPR016039 GO:0016746
Lal4g0229 507 SUPERFAMILY Thiolase-like 283 478 IPR016039 GO:0016746
Lal4g0229 507 CDD CHS_like 80 475 - -
Lal4g0229 507 SUPERFAMILY Thiolase-like 84 302 IPR016039 GO:0016746
Lal4g0229 507 Pfam FAE1/Type III polyketide synthase-like protein 92 379 IPR013601 GO:0006633|GO:0016020|GO:0016747
Lal4g0229 507 PANTHER 3-KETOACYL-COA SYNTHASE 11 8 506 - -
Lal4g0229 507 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 396 476 IPR013747 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0229 Lal-Chr4 1440171 1441694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0229 7 507 Miscellaneous Gene Families AT2G26640 79.960 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0229 K15397 - pop:7471569 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0229 4 1440171 1441694 Lal4g0229 4 1440171 1441694 ECH