Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0454 ATGTCGGAGAGAGAGAGTGAACACCTCCGATTGGCCTTGCTTTTCATATTATCAGGGCTTCTTCATGTCTGCTCAGGAGATGTTGGCACAGCAGGCCAATATACACCCCCATATCTGCCAACTGAGTGCTACGGCAACGATGTGTCTAAGTTCCCATCAAGCAACTTATTCGCGTCGGCCGGAAATGGGATATGGGACAATGGGGCAGCGTGCGGCAGGCAGTACTTTGTCAGGTGCTTGAGCGCGCAAACTCCAGGGACATGCAAAGCTGGTCAGGTCATAAAAGTGAAAATAGTTGATAGAGCCTCTAGGAGTGGAGAGATCCTTGTTCTTTCTACTATTGCATTTGGGGCTATTGCTAATCCTTCTGCTGCTTGGGTTAGCATAGAGTTTGCAGACTCGAGGTCTTTCAATTTCGGTTTCTGTGATCACATCGCTGTGTTTTTTTTTAAATCAATGTATGTGAGTCTTGCGTTTTGGTGGTTGTGTTACATAAGTGGAGTTCTTTTGAGTTTTTGA 519 0.4605 MSERESEHLRLALLFILSGLLHVCSGDVGTAGQYTPPYLPTECYGNDVSKFPSSNLFASAGNGIWDNGAACGRQYFVRCLSAQTPGTCKAGQVIKVKIVDRASRSGEILVLSTIAFGAIANPSAAWVSIEFADSRSFNFGFCDHIAVFFFKSMYVSLAFWWLCYISGVLLSF* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0454 172 Gene3D - 27 132 IPR036908 -
Vvi4g0454 172 CDD DPBB_EG45-like 27 131 - -
Vvi4g0454 172 Pfam Lytic transglycolase 64 130 IPR009009 -
Vvi4g0454 172 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 10 133 - -
Vvi4g0454 172 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 131 IPR007112 -
Vvi4g0454 172 SUPERFAMILY Barwin-like endoglucanases 14 131 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0454 Vvi-Chr4 4091281 4092283 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0454 - - vri:117912722 264.618