Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi17g1033 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1034 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma09g01609 . . . . . . . . . . . . . . . . Lapu2g01765 . . . . . . . . . . . . . . . Mepo4g01261 . Mesa1g01386 . . . . . . . . . . . . . Pste1g03663 . . . . . Pumo8g00187 . Pvu3g0112 . Rops1g00255 . Seca10g05312 . Spst2g02151 . . . Sto8g4441 . . . Trre1g01337 . . . Vian10g01819 . Vifa3g03836 . Vimu7g00376 . Viun2g00226 . Vivi4g03864 . . .
Vvi17g1035 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1036 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1037 . . . . . . . Aed5g2664 . . . . . . . . . . . Apr2g1629 . . . . . . . . . . . Cca09g02851 . . . . . . . . . . . Gma09g01608 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu5g3523 Sto8g4439 . . . . . . . . . . . . . . . . . . .
Vvi17g1038 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1039 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1040 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1041 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva04g00981 . . . . . . . . . . . . . . . . Gma09g01548 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1042 . . . . . . Aed7g0390 . . . . . . . . . . . Apr6g0892 . . . . . . . . . . . Cca08g00422 . . . . . . . . . . . . . . . . . Lal8g0513 Lal10g0906 . . . . Lan10g0498 Lan10g0498 . . . . . . . . . . . . . . . . Lja2g2356 . . Mal6g3550 . . . . . . . Mtr6g2029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr2g5138 . . . Tsu06g03499 . . . . . . . . . . Vra1g0803 .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Lapu Lapu2g01765 Chr2 31335110 31341575 -
Mepo Mepo4g01261 Chr4 16203688 16208614 -
Mesa Mesa1g01386 Chr1 19091226 19095156 -
Pste Pste1g03663 Chr1 17566943 17573065 -
Pumo Pumo8g00187 Chr8 6077510 6078046 +
Pvu Pvu3g0112 Chr3 1029900 1035237 +
Rops Rops1g00255 Chr1 7115460 7121495 -
Seca Seca10g05312 Chr10 121204741 121211426 +
Spst Spst2g02151 Chr2 20481236 20487054 -
Trre Trre1g01337 Chr1 9994231 9998802 -
Vian Vian10g01819 Chr10 30018475 30023048 -
Vifa Vifa3g03836 Chr3 1128031047 1128034718 +
Vimu Vimu7g00376 Chr7 4250627 4255192 -
Viun Viun2g00226 Chr2 4408021 4412549 +
Vivi Vivi4g03864 Chr4 158055950 158060315 -
Vvi Vvi17g1033 Chr17 13034503 13034757 -
Vvi Vvi17g1034 Chr17 13182734 13231970 +
Gma Gma09g01609 Chr09 41410177 41419438 +
Lapu Lapu2g01765 Chr2 31335110 31341575 -
Mepo Mepo4g01261 Chr4 16203688 16208614 -
Mesa Mesa1g01386 Chr1 19091226 19095156 -
Pste Pste1g03663 Chr1 17566943 17573065 -
Pumo Pumo8g00187 Chr8 6077510 6078046 +
Pvu Pvu3g0112 Chr3 1029900 1035237 +
Rops Rops1g00255 Chr1 7115460 7121495 -
Seca Seca10g05312 Chr10 121204741 121211426 +
Spst Spst2g02151 Chr2 20481236 20487054 -
Sto Sto8g4441 Chr8 47148547 47157746 +
Trre Trre1g01337 Chr1 9994231 9998802 -
Vian Vian10g01819 Chr10 30018475 30023048 -
Vifa Vifa3g03836 Chr3 1128031047 1128034718 +
Vimu Vimu7g00376 Chr7 4250627 4255192 -
Viun Viun2g00226 Chr2 4408021 4412549 +
Vivi Vivi4g03864 Chr4 158055950 158060315 -
Vvi Vvi17g1035 Chr17 13269708 13270178 +
Vvi Vvi17g1036 Chr17 13288556 13288857 +
Vvi Vvi17g1037 Chr17 13300181 13301593 -
Aed Aed5g2664 Chr5 27176723 27179425 -
Apr Apr2g1629 Chr2 22002333 22004611 +
Cca Cca09g02851 Chr09 54104283 54106839 -
Gma Gma09g01608 Chr09 41402648 41406030 -
Ssu Ssu5g3523 Chr5 86250448 86252831 -
Sto Sto8g4439 Chr8 47124353 47128032 -
Vvi Vvi17g1038 Chr17 13347003 13350001 -
Vvi Vvi17g1039 Chr17 13360420 13384602 -
Vvi Vvi17g1040 Chr17 13442116 13442208 -
Vvi Vvi17g1041 Chr17 13469820 13471356 +
Bva Bva04g00981 Chr04 6438531 6439898 +
Gma Gma09g01548 Chr09 40569847 40572736 -
Vvi Vvi17g1042 Chr17 13472940 13473557 -
Aed Aed7g0390 Chr7 2868443 2869060 +
Apr Apr6g0892 Chr6 13406717 13407316 -
Cca Cca08g00422 Chr08 6436997 6437745 +
Lal Lal8g0513 Chr8 3516080 3516724 -
Lal Lal10g0906 Chr10 16493036 16493680 +
Lan Lan10g0498 Chr10 3886352 3887293 -
Lan Lan10g0498 Chr10 3886352 3887293 -
Lja Lja2g2356 Chr2 28402031 28443701 +
Mal Mal6g3550 Chr6 104493404 104494003 +
Mtr Mtr6g2029 Chr6 36731652 36732356 +
Tpr Tpr2g5138 Chr2 57412134 57412949 -
Tsu Tsu06g03499 Chr06 46134975 46135553 -
Vra Vra1g0803 Chr1 9471906 9473038 +