Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi17g1023 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1024 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1025 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1026 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1027 . . . . . Adu03g02096 . . Aev08g2370 . Ahy18g2992 . Aip08g03395 . . . . . Apr1g0268 . . . . . . . Bva06g01472 Bva05g00277 . . Cca03g00351 . . . . . . . . . Gma06g01537 Gma04g01874 . . Gso6g1457 Gso6g1457 . . . . . Lal17g0862 Lal4g0742 Lal21g0768 . . . . . . . . . . . . . . . . . . . Lja4g2381 Mal5g4004 . . . . . . . Mtr4g3719 . . . . Phco7g01997 . . . . . . . . . . . Pumo10g01908 . Pvu9g1739 . Rops10g00773 . Seca4g02890 . . . . Sto3g1292 . Tpr5g2766 . . . Tsu04g02514 . . . . . . Vimu10g01965 . Viun9g01439 . . . .
Vvi17g1028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1030 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1031 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1032 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Vvi Vvi17g1023 Chr17 12706475 12706819 -
Vvi Vvi17g1024 Chr17 12734554 12734751 -
Vvi Vvi17g1025 Chr17 12764329 12764478 -
Vvi Vvi17g1026 Chr17 12796714 12805848 +
Vvi Vvi17g1027 Chr17 12807152 12811693 +
Adu Adu03g02096 Chr03 41537456 41540900 -
Aev Aev08g2370 Chr08 22752061 22754582 +
Ahy Ahy18g2992 Chr18 135055749 135058904 -
Aip Aip08g03395 Chr08 125179696 125184496 -
Apr Apr1g0268 Chr1 3084401 3088740 -
Bva Bva06g01472 Chr06 10709225 10712433 +
Bva Bva05g00277 Chr05 1355049 1359092 -
Cca Cca03g00351 Chr03 5417124 5418482 -
Gma Gma06g01537 Chr06 14821820 14824297 -
Gma Gma04g01874 Chr04 48967243 48970054 +
Gso Gso6g1457 Chr6 14530900 14533813 -
Gso Gso6g1457 Chr6 14530900 14533813 -
Lal Lal17g0862 Chr17 6569985 6573048 -
Lal Lal4g0742 Chr4 6164135 6167377 -
Lal Lal21g0768 Chr21 6441194 6444230 +
Lja Lja4g2381 Chr4 26654034 26657716 +
Mal Mal5g4004 Chr5 109708524 109711416 -
Mtr Mtr4g3719 Chr4 50944438 50947707 -
Phco Phco7g01997 Chr7 34040468 34042953 -
Pumo Pumo10g01908 Chr10 25159466 25175376 -
Pvu Pvu9g1739 Chr9 24582643 24583761 -
Rops Rops10g00773 Chr10 18207294 18215546 +
Seca Seca4g02890 Chr4 49841218 49844404 -
Sto Sto3g1292 Chr3 9342771 9346734 -
Tpr Tpr5g2766 Chr5 49776275 49779436 -
Tsu Tsu04g02514 Chr04 28382920 28386328 -
Vimu Vimu10g01965 Chr10 28578674 28581048 +
Viun Viun9g01439 Chr9 16306888 16309835 +
Vvi Vvi17g1028 Chr17 12814029 12815072 +
Vvi Vvi17g1029 Chr17 12816668 12820663 -
Vvi Vvi17g1030 Chr17 12825918 12826244 +
Vvi Vvi17g1031 Chr17 12858127 12864081 +
Vvi Vvi17g1032 Chr17 13003386 13003745 -