Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00376 ATGGCTTCCCTTCTCAGAAAGTTAAGGCCTTCTTCTGTGCCTGTTGCTGCCGTTAAAACTGAAGACAGCATAAGCAGCAGCTATGAGTACTCCATTGCCATGCTGTATAATGGCCCTCCTCTCTGTTACTCCATTCCCGAAATTCCTGCTTTCAAAATTGACCAAATTCCAGTTGCAACCATTGCTCCTCTCTCTCATGATGACCTCTCTGTCCCGGTAATCCAACCTCTTAGTAAAAGCCTTAACAAGAGGAAGCAGAACCCGTGTTCAGCAGATTCTGCTGTCCCTCCAAACTTGGATTCTCGTGCAACTGATTCATCCCCAATACTGTCTGGTACTGATGGTGATGACATGTACGAGAGTTTGGAGACTTTGAAAGTGCCCTGTGCTAGAGATGGCGCCATTCTTAACACAACTTTGGACACCACAGAATCAGGTCCAGCTTCAGGTTCAGTTTCAGGTTCAGGTTCAACCTCTCTTTTTGCTTCCTCTGATGGGATTTGTTCTTTGGGAGAAGAAGAGCAAGCAACAAGTCCCAAGCATGTGAAGCGTGTTTCTGCCGTGACCTTCTGTGATCCTGAGTCAAACTACATGATGGAGAGCGATAGTGATGACTTTAGTGATTCCCAGGTTGAGAGTGTTCCTGTGATGGAACGTGCAGTGAGACCTGGGAAGAAGGGTTCTTGCTATAAGTGCCTCAAGGGGAACCGATTCACACCGAAGGAGGTTTGCATTGTTTGTAGTGCAAAGTATTGTCGCAGCTGTGTGGTGAGGGCCATGGGGTCCATGCCACAGGGAAGAAAATGTGTGACTTGCATTGGATACAGAATTGATGAAAGAAAGAGGAGGAAACTGGGGAAATCTTCGCGGATGATGAAGCAGTTGCTGTCTGAGTTGATTGTGGCTGAAGTCATGGATAATGAAAAGTCTTGTGAAGAAAATCAAATACCACCAGAGCTTGTTTTTGTTAACTCGCAACCTCTGGACCGGGAACAGCTTTTGTTGCTTTTAAACTGTCGAAATCCCCCAAAACATCTTAAACCAGGATCCTATTGGTATGATAAAGCATCTGGATTTTGGGGAAAGATTCATGAAGAAGCTCATGGAAATAAACCAAATAGAGGTTACAAACGTTTTTGTGGAGATACCTCTAGAATTAGTTTACTGTGCCTTAAAAAATGTGCTTCGAACTCAAGGATGCCCTTCAATGAAGGTCAACCACCCAGTGAGGTTATCAGCCCCCAGCTGGTTGTTGGAGGTCGCTTGGACAAGTATGCAAGCAATGGAGACACAAATGTGATTATAAATGATCGCCTGATTACAAAAAAAGAGTTATGGGTACTGCAGTTGGCTGGAGTGCCGTGTGAGGGAACACCAAACTTTTGGGTGAACGCTGATGGATCATACAGGGAAGAGGGACAGAGGAATGATAGGGGGTGTATATGGGAAAAGCGCAGAGCAAGGTTGGCTTGTGCAATTCTGTCTTTGCCAGTTCCTTCTAAGTCTGTAACTCTTTCTTGTGAAGGTGAAATGCCAAACAAGGACAGTCTTCCTCGGAAAATACTTCACAAATTTCTACTTGTTGGTTCTGTCAATTCTGGTGCATGCACTATATTTAAACAGGCCAAGCTTCTGTATAATGTGCCTTTCTCTGAAAATGAGCTCGAAAATATCAAGTTGGTGATCCAAAGCAACCTGTTTACCTATCTTGGTATACTGCTGGAGGGGCGTGCAAATTTTGAAACAGAGTTTTTGTTGGAGAATAGGAGAGAAAGGCCTGTGGCTGAATCCACTTCATCAGCAGAGAATATCAGCAGTGATGATGTTGAAACAACACCCTATTCCATTGGCCCACGACTGAAAGCTTTCTCGGATTGGCTACTCAAATACATGGTGTCAGGTAACCTTGATGCAATATTTCCTGCTGCTATACGTGAATATGGACCACTTGTGGAAGGTGTGTGGAAGGACAAAGCCATTCAAGCAACGTATGACAGGCGAAATGAACTAGAAATGCTACCTAGAAGTGCAAACTATTTTCTGGACCGTGCTGTTGAAATTTCCAAGACAGACTATAAGCCATCTGATATGGACATCTTGTACGCTGAGGGCATATCGTTACCCAAAAGCCTTACTTCAATGGAATTTTCTTTCCCTAAATTAAGCAGTGAGGACTCTTTGCATGCTGATTATCAACATGACTCTTCTCTCAGATTACATCCTAAAAGCCTTGGACCAAAGTGCAAGTGGTTGGAGATGTTTGAAGATACGGATGTTGTAATATTCTCAGTTGCTTTATCTGACTATGATGAGTACATTACAGACAGTGAAGGGGTTTCTACAAACAAAATGATGGCAGCTAAGGCTCTCTTGGAAAACATCATTGCACATCCAGCCTTTCATAACAAAAAATTTCTCCTAGTACTGACCAAATTTGATCTACTTGAGGAAAAGATTGAAGACGTTCCTCTATCAAAATGTGAATGGTTTAGTGATTTCAAACCATTTATCAGTCCCAATATGAAGAAAGGTTGTAGCAATGGCAATAACCCTTTGTTAGCTCAATCTGCTTTTCAATACATTGCTGTCAAGTTCAAGAGATTGTTCCATTCTCTCACTCACCGAATTCTCTTTGTTTCACTGGTTAATGGGTTGGAACCTGATACTGTTGATGAAGCTCTCAGAAATGGAAGGGAGGTCATGGAGTGGGAAAAATGGGACCCCTCCATTGTAACAGATCCAAAGTCAGAGATTACATCAACAAGCATTGAGGATCCAAGTTACACATAA 2790 0.4301 MASLLRKLRPSSVPVAAVKTEDSISSSYEYSIAMLYNGPPLCYSIPEIPAFKIDQIPVATIAPLSHDDLSVPVIQPLSKSLNKRKQNPCSADSAVPPNLDSRATDSSPILSGTDGDDMYESLETLKVPCARDGAILNTTLDTTESGPASGSVSGSGSTSLFASSDGICSLGEEEQATSPKHVKRVSAVTFCDPESNYMMESDSDDFSDSQVESVPVMERAVRPGKKGSCYKCLKGNRFTPKEVCIVCSAKYCRSCVVRAMGSMPQGRKCVTCIGYRIDERKRRKLGKSSRMMKQLLSELIVAEVMDNEKSCEENQIPPELVFVNSQPLDREQLLLLLNCRNPPKHLKPGSYWYDKASGFWGKIHEEAHGNKPNRGYKRFCGDTSRISLLCLKKCASNSRMPFNEGQPPSEVISPQLVVGGRLDKYASNGDTNVIINDRLITKKELWVLQLAGVPCEGTPNFWVNADGSYREEGQRNDRGCIWEKRRARLACAILSLPVPSKSVTLSCEGEMPNKDSLPRKILHKFLLVGSVNSGACTIFKQAKLLYNVPFSENELENIKLVIQSNLFTYLGILLEGRANFETEFLLENRRERPVAESTSSAENISSDDVETTPYSIGPRLKAFSDWLLKYMVSGNLDAIFPAAIREYGPLVEGVWKDKAIQATYDRRNELEMLPRSANYFLDRAVEISKTDYKPSDMDILYAEGISLPKSLTSMEFSFPKLSSEDSLHADYQHDSSLRLHPKSLGPKCKWLEMFEDTDVVIFSVALSDYDEYITDSEGVSTNKMMAAKALLENIIAHPAFHNKKFLLVLTKFDLLEEKIEDVPLSKCEWFSDFKPFISPNMKKGCSNGNNPLLAQSAFQYIAVKFKRLFHSLTHRILFVSLVNGLEPDTVDEALRNGREVMEWEKWDPSIVTDPKSEITSTSIEDPSYT 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00376 929 SMART galpha_1 499 895 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vimu7g00376 929 MobiDBLite consensus disorder prediction 82 111 - -
Vimu7g00376 929 CDD G-alpha 523 876 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vimu7g00376 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 888 IPR027417 -
Vimu7g00376 929 PANTHER OS01G0977800 PROTEIN 16 366 - -
Vimu7g00376 929 MobiDBLite consensus disorder prediction 82 116 - -
Vimu7g00376 929 SUPERFAMILY FYVE/PHD zinc finger 204 273 IPR011011 -
Vimu7g00376 929 Gene3D - 743 907 IPR027417 -
Vimu7g00376 929 FunFam Guanine nucleotide-binding protein subunit alpha 744 843 - -
Vimu7g00376 929 FunFam Extra-large guanine nucleotide-binding protein 3 551 703 - -
Vimu7g00376 929 Gene3D - 551 703 IPR011025 GO:0007165
Vimu7g00376 929 SUPERFAMILY Transducin (alpha subunit), insertion domain 550 702 IPR011025 GO:0007165
Vimu7g00376 929 PRINTS Alpha G protein (transducin) signature 524 539 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vimu7g00376 929 PRINTS Alpha G protein (transducin) signature 757 785 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vimu7g00376 929 PRINTS Alpha G protein (transducin) signature 805 814 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vimu7g00376 929 Pfam G-protein alpha subunit 521 899 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vimu7g00376 929 ProSiteProfiles G-alpha domain profile. 521 912 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00376 Vimu-Chr7 4250627 4255192 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00376 - - gmx:112997598 1355.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00376 7 4250627 4255192 Vimu7g00376 7 4250627 4255192 ECH