Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1039 ATGAAATCAACGACGGACATAGTGAAGAAACGCTTCCTAGGGTTTCTCATATGGCAATCAGTCCACTCTACTATCATCTTCATCCTCTTCACAACCACTCTCTCTCAAAATGGCATCGTTTCACTACCTTCCCTCCTCACCTGCCTTTCCTTCCTCACCTTCCACCTCTCCCTCCTACTCTTCTCCGCCTCCCTCTCCTTCATCTCCTCTCCCTACTACGACCGTCCCTCTTCCCCTTACGACCTCGCCCTCGGCCTCCTCCGCTTTCTCTTCTCCGGCCAGTCTCAGCCCCATGGCTTTCTCCGCCGGGCCAGGGTTTTCCTGGGTCTGTTCGGGTTTTTGCTGGAGGCGGCACTGGCCGGCACGGTGGCGCTGGTGTCTCTGTGCAAGTCTGAGTCGTGTGGTGGAGTGGCGGTGGTGGGGTTGAGGGGTTTTGGATTTGGCTTGGTTTATGGGATTTATTATGTGTTCAAGCGGCGCTGGGTTTTGGAGTTTCCTATCATTCAGCGTCCCCTTTTCTTTAGCTTCAAAATGGGTCTCCCTTCAGCTATTGGACAAGCTGTAAAGCTTTCTGCTGCAGCATACATATTTTCGGGTGTGCTGATACTATTTCTGCAAGATCAGTTTGGGAGTCATATTAAAATGGGAAATTTCATTCTTGAACAGATCATATTTTATGTTGGAATTTTTTCAGTGTGTCTCTGTTGGGAATTAAGTCACCATCTGCATCAGGTGATGCATACAAAGAGGTATATATTTGCACCACCAAAAGGATCAGCGGCAGCAGAAACAAATCCAAGTGAACCTCTCTTGGCAGCTCTAGAGGAGAGCACTCCAAAATCTCTTCCTCGGTATCTTGCATATCTTGATCTGTGTATGGTTTGTGACAATAATGTTGATAGCTGGCGCCGAGCTGCCTTCTTTGAAGAAACTGGTGAAACTTACAAAAAAGTTGTAGCTGTGTGCCTGAGGCCTCTGGAACATCTTGCATCTAATTTTGCTGAAGGCTTGGAAAGTTCTTCTGTTGATAAAACTTACCAACAATCCAGTCAGTTACAGTTGCCAACTGTCTCAGAACGAGACTCAAGGTTCTCTGAACCATTTAGCAACATCCAGCTATGTGCATGGTGTTCCTGGGCAGTTGCCTCACTTACTGCTCGTTCACACAAGGAGGATAGGTTTGGGGTTGCTCAACTTTCCGGCAGTAATGCTGCTGTTATATCAACCCTGTTATCTTGCCTGCTTGCTGTTGAAACGTTCCTGGGAAAGAAGACCAGCTTGCAGTCCCCCAATGCTCTGATGGGACCGGCTGGTATCAAATGGGCCACAGTGACCACAGCAAGAAGTGACGCGGCAACCAGTGTTGTGGGTAAAAAGAGAGGTTTCCCACTACACTCACAAGCTTATGCCATTGCTGATGTTTTAAGAACTTCAATCTACTGCATTGTCTCTGTTTTTCATGAGGAAATGTTGACTGGCGCTAAAGCAGGACTACTTGAGAAGGATTGGATCATCGGTGGCAAACCTCTTTATGGAACCCGCGAACTCCTTTTGCAGAAACTGCATCTTTTCCTGGATTTCCGAGCTTGCTAG 1593 0.4765 MKSTTDIVKKRFLGFLIWQSVHSTIIFILFTTTLSQNGIVSLPSLLTCLSFLTFHLSLLLFSASLSFISSPYYDRPSSPYDLALGLLRFLFSGQSQPHGFLRRARVFLGLFGFLLEAALAGTVALVSLCKSESCGGVAVVGLRGFGFGLVYGIYYVFKRRWVLEFPIIQRPLFFSFKMGLPSAIGQAVKLSAAAYIFSGVLILFLQDQFGSHIKMGNFILEQIIFYVGIFSVCLCWELSHHLHQVMHTKRYIFAPPKGSAAAETNPSEPLLAALEESTPKSLPRYLAYLDLCMVCDNNVDSWRRAAFFEETGETYKKVVAVCLRPLEHLASNFAEGLESSSVDKTYQQSSQLQLPTVSERDSRFSEPFSNIQLCAWCSWAVASLTARSHKEDRFGVAQLSGSNAAVISTLLSCLLAVETFLGKKTSLQSPNALMGPAGIKWATVTTARSDAATSVVGKKRGFPLHSQAYAIADVLRTSIYCIVSVFHEEMLTGAKAGLLEKDWIIGGKPLYGTRELLLQKLHLFLDFRAC* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1039 530 PANTHER UNCHARACTERIZED 3 529 IPR019049 -
Vvi17g1039 530 Pfam Nucleoporin protein Ndc1-Nup 147 362 IPR019049 -
Vvi17g1039 530 Pfam Nucleoporin protein Ndc1-Nup 366 488 IPR019049 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1039 K14315 - vvi:100256014 944.88