Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05312 ATGGCTTCTATTCTAAGGAAATTAAGGGCTTCTGTGCCTTCTGTTCCTGTGGAAAGTGAAGATAGCATTAGCAGCTATGAGTACTCCTTTGCTGTGGTGTACAATGGCCCTCCTCTGAGTTACTCAATCCCTGAAATCCCTGCTTTCAAAATTGACCAAATCCCAGTTGCAGCCATTGCCCCTTCTATGTCACATGACTTCTCTGTGCCAATTATTCAACCTCTTGGCAAATCCCATCACAGAAAGAAGCACAAAGAGTCCACCCCAGACTCTGCTATGTCCCCAAATTTGGACCCTCATGCAATTGAAACATCAAAAACTGATTTTGATGTGCATGAGAGTACTACAACTACTTTGGAATCACTTGGAGATGACAGAGGGTTACACAGTGGAATGACTCCCCTTCCCACAAATTCTGACACCACAGAATCAAATTCAATCTCTCGTTCTGGTTCTTCTGAGATTTGTTCATTCAGAGAAGATGAGCATGATGGTGAAAGTGAAATACCAGGTACAAAACATACCAAGCGTCCTTCTGCTGTTACCTTTCGTGATCCTGAGTCAAATTACATGATAGAAACCTGTAGTGAAGAGTTTTATAGTTCCCAAGTTGGAAGTACCCCTGTGAAGCCACGTGCTGTTAGACCAGGGAAGAAAGGCTCTTGCTATAAGTGCCTTAAAGGGAACCGTTTAACAGTGAAGGAGGTTTGCATTGTTTGTAGTGCAAAGTATTGCCGAGGCTGTGTGATAAGGGCAATGGGGTCCATGCCTCAGGGAAGGAAATGTGTTACTTGCATTGGTTATGGGATTGATGAGAACAAGAGGAGGAAATTGGGGAAGTGTTCTAGGTTGCTCAAACAGTTGCTGTCTGAGTCTATGGTGACTCAAATCATGCAGGATGAAAGGTCTTGTGAAGTAAATCAAATATCACCAGAGCTTGTTCGAGTGAACTTGCAACCTCTTGATAGGGAACAGCTCAGTTTGCTCCTCAATTGTTCAAACCCACCAAAACAACTAAAACCAGGATCCTATTGGTATGATAAAGCATCTGGATTTTGGGGAAAGGAAGGTCAACCACCTTGTCAAATTATCAGCCCCAGGCTAGATGTTGGGGGTCGCTTGCAGAAAAATGCAAGCAATGGAAACACAAATGTGACAATAAATGACCGCGAGATTACAAAAAGAGAGCTATTGATACTAAAGATGGCAGGAGTACCCTGTGAAGGAACTCCTAACTTTTGGGTGAGTGATGATGGGTCATACCGGGAAGAGGGGCAGAGGAATGATAGGGGGCGTATATGGGATAAGGTGATATCATTGTTGACATTCCCTGGAACAAAGTTTGCTTGTGCAATTCTGTCTCTGCCAGTTCCTTCAAATTCTGTGACTCCTTCTGATGAAGGTGTGACAGCTAACAAAGACAGCATTCATCAGAAAAATCTTCACAAATTTCTACTTGTTGGTTCTGCCAATTCTGGAGCATGTACTATATTTAAACAGGTCAAACTTCTGTATGATGTTCCTTTCTCTGAAAATGAGCTCCAAAATATCAAGATGGTGATCCAAAGCAACCTGTTTAATTACCTTGGTATACTGCTGGAGGGGCGTGAAAATTTTGAAGAAGAGAGTTTGCTAAAGAATAGGAAAAGATGGCCTATTAATGAATCCACTTCATATGGAAATACCGGTGATAATGTTCATACAACAACACTCTATTCCATTGGGCCACGACTGAAACCTTTTGCAGATTGGCTACTAAAATGCATGGTGTCTGGTAACTTGGATACAATATTTCCAGCTGCCACACGTGAATATGGGCCACTGGTGGAGGATTTGTGGAGGGATGAAGCCATTCAGGCAACATACAACAGGAGAAATGAACTAAAAATGCTACCTAGAAGTGCAAACTATTTTCTAGACCGGGCTGTTGAAATTTCCAAGATAGACTATGAACCCTCTGATATGGACATCTTGTATGCTGAGGGGATATCGTTATCCAACAGCCTCACTTCAATGGAATTTTCATTTCCCAAGTCAAGCACTGAAGAGGCTTTGTATCCTGAGTATCAACATGAATCTTCTCTCAAGTACCAACTGATCAGAGTACATCCTAAAAGCCTTGGAGGAAACTGCAAGTGGTTGGAGATGTTTGAAGACACAGATCTTGTATTGTTCTCTGTGGCCTTAACAGACTATGATGAGTACACTGTAGACAATAATGGAGTTGCTACCAACAAAATGTTAGCAGCTAAGCATCTCTTTGAAAACGTCATTTCTCATCCAACCTTCCATAACAAGAAATTTCTTTTAATACTGACCAAATTTGACCTGCTTGAGGAAAAGATTGAACTGGTTCCCTTAAAAAGATGTGAATGGTTTAGTGACTTCAATCCAGTTATCAGTCACAATCACAAAAAAGGTGGTAACAATGGCAATAGCCCTCCATTAGCTCAAAGTGCTTTTCAATACATTGCTGTGAAGTTCAAGAGATTGTTCCATTCTGTTACTGACAGAAAACTGTTTGTTTCACTGGTTAATGGGTTGGAACCTGATACTATTGATGAGGCTCTCAGATATGGTAGGGAAGTTATGGAGTGGGAAAAATGGGATCCCTCTATGGGAAATGAGAAGTCAGAGATGACTTCAACAAGCATTGAGGAGGTAAGTTCCTCATAA 2676 0.4159 MASILRKLRASVPSVPVESEDSISSYEYSFAVVYNGPPLSYSIPEIPAFKIDQIPVAAIAPSMSHDFSVPIIQPLGKSHHRKKHKESTPDSAMSPNLDPHAIETSKTDFDVHESTTTTLESLGDDRGLHSGMTPLPTNSDTTESNSISRSGSSEICSFREDEHDGESEIPGTKHTKRPSAVTFRDPESNYMIETCSEEFYSSQVGSTPVKPRAVRPGKKGSCYKCLKGNRLTVKEVCIVCSAKYCRGCVIRAMGSMPQGRKCVTCIGYGIDENKRRKLGKCSRLLKQLLSESMVTQIMQDERSCEVNQISPELVRVNLQPLDREQLSLLLNCSNPPKQLKPGSYWYDKASGFWGKEGQPPCQIISPRLDVGGRLQKNASNGNTNVTINDREITKRELLILKMAGVPCEGTPNFWVSDDGSYREEGQRNDRGRIWDKVISLLTFPGTKFACAILSLPVPSNSVTPSDEGVTANKDSIHQKNLHKFLLVGSANSGACTIFKQVKLLYDVPFSENELQNIKMVIQSNLFNYLGILLEGRENFEEESLLKNRKRWPINESTSYGNTGDNVHTTTLYSIGPRLKPFADWLLKCMVSGNLDTIFPAATREYGPLVEDLWRDEAIQATYNRRNELKMLPRSANYFLDRAVEISKIDYEPSDMDILYAEGISLSNSLTSMEFSFPKSSTEEALYPEYQHESSLKYQLIRVHPKSLGGNCKWLEMFEDTDLVLFSVALTDYDEYTVDNNGVATNKMLAAKHLFENVISHPTFHNKKFLLILTKFDLLEEKIELVPLKRCEWFSDFNPVISHNHKKGGNNGNSPPLAQSAFQYIAVKFKRLFHSVTDRKLFVSLVNGLEPDTIDEALRYGREVMEWEKWDPSMGNEKSEMTSTSIEEVSSS. 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05312 891 FunFam Extra-large guanine nucleotide-binding protein 3 510 661 - -
Seca10g05312 891 CDD G-alpha 482 854 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Seca10g05312 891 SMART galpha_1 469 848 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Seca10g05312 891 Gene3D - 658 870 IPR027417 -
Seca10g05312 891 PANTHER OS01G0977800 PROTEIN 16 386 - -
Seca10g05312 891 PRINTS Alpha G protein (transducin) signature 720 748 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Seca10g05312 891 PRINTS Alpha G protein (transducin) signature 650 672 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Seca10g05312 891 PRINTS Alpha G protein (transducin) signature 483 498 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Seca10g05312 891 PRINTS Alpha G protein (transducin) signature 768 777 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Seca10g05312 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 858 IPR027417 -
Seca10g05312 891 MobiDBLite consensus disorder prediction 155 180 - -
Seca10g05312 891 Pfam G-protein alpha subunit 465 858 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Seca10g05312 891 Gene3D - 510 657 IPR011025 GO:0007165
Seca10g05312 891 MobiDBLite consensus disorder prediction 872 891 - -
Seca10g05312 891 ProSiteProfiles G-alpha domain profile. 480 881 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Seca10g05312 891 MobiDBLite consensus disorder prediction 132 154 - -
Seca10g05312 891 MobiDBLite consensus disorder prediction 77 180 - -
Seca10g05312 891 SUPERFAMILY Transducin (alpha subunit), insertion domain 509 660 IPR011025 GO:0007165
Seca10g05312 891 MobiDBLite consensus disorder prediction 875 891 - -
Seca10g05312 891 FunFam Guanine nucleotide-binding protein subunit alpha 686 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05312 Seca-Chr10 121204741 121211426 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05312 - - gmx:112997598 1277.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05312 10 121204741 121211426 Seca10g05312 10 121204741 121211426 ECH