Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03836 ATGGTTTCTTTTCTAAGAAAGTTAAGAACTTCTTCTGTTCCTCCTATGGAAACAGAAGATAGCATTAGTGGTAGTAGTAATTTTGAATATTCTTTTGCTGTTGTTTATACTGGTCCTCCTCTTGATCATTCGATCCCTGAAATCCCTACTTTCAAAATTGATCAAGTTCCAATTGCTTCTATAGCTCCTTCTCTTTCTCATGATTTCAATGTACCTGTTATTCAACCACTTGGTAAAGTTCTTCACAAGAATAAGCTCAAACATAAAAGAACAACTTCAGATTCTACTGTTTATCCTAATTTAGAATCTCATGTAGTTGAAATTGAAGCATCAAACAGTGATGTTCATGTTCATGTTCATGTTCATGTTGATTTGAATGAGAATGAGAATGGAGTTGTTGATGATGTTCCTAGCAATTCTGATACAATTGAATCAGGTTCTGGTTCTGGTATAGGGTTTAGGACTTCTGAGATTTGTTCAATAAGTGAAGAACAAGAAGAAGAAGAAAGAGTTAGAACGAAACATGTTAAACATCCTTCCGCGGTTACATTCTGTGACCCCGAATCGAATTGCGTGGTAGAAATCGAAAGTGACGAGTTTTCTGATTCGCGCAATGTAAGTGTACCTGTGAAGGAACATGCAATTAGACCAGGGAAAAAAGGGTCTTGTTATAAGTGTCTTAAAGGGAATAGTTTAACGGAGAGAGAGGTTTGTATTGTTTGTAGTGCAAAGTATTGTAGTTACTGTTTGATACGAGCAATGGGAGCTATGCCGGAAGGAAGGAAATGTTTGGGTTGCATTGGTTATGGAATTGATGAGAGTAAAAGAAGGAAGCTTGGTAAATGTTCGAGGATGATGAAACAGTTGTTGTCTGAGACTATTGTAGATCAAATTATGGAAAATGAAAGGCTTTGTGAAGCTAATCAAATTCCGCCCGAGCTTGTTCAAGTTAACTCGCAAAGACTTAATCGAGAACAACTTAATTTGTTGCTTCATTGTGATCATCCTCCGAAAGATCTTAAACCGGGATCTTATTGGTATGATAAAGCTTCTGGATTTTGGGGAAAGAAAGGTCAACCGCCTTGTGAAATAATAAGCCCCCGGTTGGACGTTGGCGGTCGTTTGGAGAAAAATGCAAGCCACGGAAACACAAACGTGATGATAAATGATCGTGTGATTACTAAAAAAGAGATCATGATACTAAAGATGGCAGGAGTACAATGTGAAGGAACTCCACACTTTTGGGTTAATCCTGATGGATCGTACCGCGAAGAAGGACAAAAGAACGATAGGGGGCGCATATGGGACAAGGTTGGAACAAAGGTTGCTTGTGCTATTCTGTCTCTGCCAGTTCCTTCAAAATCTGCGTCTCTTAACGATGAAGTTGAAACAGCTAAGAAACTCAGTCTTCATAAGAAAAGACTTCAAAATTTTTTACTCGTCGGTTGTGTCAATTCTGGAGCGTGCACTATATTTAAGCAGGCCAAACTTTTATATGATGCTCCTTTCTCCGAAAACGAGCTTCAAAATATCAAGTTGGTGATTCAAAGCAACCTGTTTATATACCTTGGTTTACTTCTGGAGGCGCGTGGAGATTTCGAAGAAGAGTGTTTGCTAGAAAATCAGAAAAGATTGTCTTCTGATGAATCCACATCATCTGGTAACATGGATGCAATATTTCCAGCTGCTATACGCGAATATGGGCCAATGGTAGAGGATTTGTGGAGGAACGAGGCGATTCAGGCGACATACAACAGGAGAAATGAACTAAAAATGCTACCTAGAAGTGCTAACTATTTTCTAGACAGGGCTATTGAAATTTCCAAGATAGATTATGAACCATCTGATATGGACATTTTATATGCTGAGGGGATGTCATTACCCAACAGCCTCACATCAATGGAGTTTTCATTTCCAAAGTCGAGCAGAGAGGAGTCTTTGCATCCCGATTATCAACACGATTCTTCTCTCAGATATCAGCTCATCAGAGTACATCCTAAAAGTCTTGGAGTAAACTGCAAGTGGTTGGAGATGTTCGAAGACACCGATGTGATTTTGTTCTCTGTCTCCTTAACCGACTATGATGAGTACATTGTAGACAGCAAAGGAGTTTCCACAAACAAAATGTTGGTATCGAAAAACCTATTTGAAAACATCATCGATCATCCAACTTTCAAGAAGAAGAAATTTGTTCTGATACTTACCAAATTTGATCTTCTAGAGGAAAAGATCGAACATGTTCCACTAAAAAAGTGTGAATGGTTTTCCGACTTTAATCCGGTTACAAGTCACAGTAAAAAAAGAAGTGGCAATGCTAACAACGGAACTATGCCATCATTAGCTCAAAGTGCTTTTCAATACATTGCTACAAAGTTTAAGAGATTGTTCCATTCTTTTACAGAACGAATTCTGTTTGTTTCTTTGGTTACTGGATTGGAACCCGATACGATCGATGAAGCTCTTAGATATGGTAGGGAGGTTATAGAATGGGAAAAATGGGATCCTTCTATTGTTAATGAGAAGTCTGAGATTACTTCAACCAGTGCTGAAGAGGCAAGTTTTTCATAA 2568 0.3843 MVSFLRKLRTSSVPPMETEDSISGSSNFEYSFAVVYTGPPLDHSIPEIPTFKIDQVPIASIAPSLSHDFNVPVIQPLGKVLHKNKLKHKRTTSDSTVYPNLESHVVEIEASNSDVHVHVHVHVDLNENENGVVDDVPSNSDTIESGSGSGIGFRTSEICSISEEQEEEERVRTKHVKHPSAVTFCDPESNCVVEIESDEFSDSRNVSVPVKEHAIRPGKKGSCYKCLKGNSLTEREVCIVCSAKYCSYCLIRAMGAMPEGRKCLGCIGYGIDESKRRKLGKCSRMMKQLLSETIVDQIMENERLCEANQIPPELVQVNSQRLNREQLNLLLHCDHPPKDLKPGSYWYDKASGFWGKKGQPPCEIISPRLDVGGRLEKNASHGNTNVMINDRVITKKEIMILKMAGVQCEGTPHFWVNPDGSYREEGQKNDRGRIWDKVGTKVACAILSLPVPSKSASLNDEVETAKKLSLHKKRLQNFLLVGCVNSGACTIFKQAKLLYDAPFSENELQNIKLVIQSNLFIYLGLLLEARGDFEEECLLENQKRLSSDESTSSGNMDAIFPAAIREYGPMVEDLWRNEAIQATYNRRNELKMLPRSANYFLDRAIEISKIDYEPSDMDILYAEGMSLPNSLTSMEFSFPKSSREESLHPDYQHDSSLRYQLIRVHPKSLGVNCKWLEMFEDTDVILFSVSLTDYDEYIVDSKGVSTNKMLVSKNLFENIIDHPTFKKKKFVLILTKFDLLEEKIEHVPLKKCEWFSDFNPVTSHSKKRSGNANNGTMPSLAQSAFQYIATKFKRLFHSFTERILFVSLVTGLEPDTIDEALRYGREVIEWEKWDPSIVNEKSEITSTSAEEASFS 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03836 855 ProSiteProfiles G-alpha domain profile. 474 844 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa3g03836 855 SMART galpha_1 456 812 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa3g03836 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 822 IPR027417 -
Vifa3g03836 855 Pfam G-protein alpha subunit 458 823 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa3g03836 855 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 254 832 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa3g03836 855 MobiDBLite consensus disorder prediction 1 23 - -
Vifa3g03836 855 Gene3D - 504 619 IPR011025 GO:0007165
Vifa3g03836 855 Gene3D - 620 836 IPR027417 -
Vifa3g03836 855 SUPERFAMILY Transducin (alpha subunit), insertion domain 503 622 IPR011025 GO:0007165
Vifa3g03836 855 FunFam Guanine nucleotide-binding protein subunit alpha 651 816 - -
Vifa3g03836 855 CDD G-alpha 479 831 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03836 Vifa-Chr3 1128031047 1128034718 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03836 - - tpra:123902613 1235.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03836 3 1128031047 1128034718 Vifa3g03836 3 1128031047 1128034718 ECH