Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1034 ATGGCGTCGGACGTGGAAGGGGAGAAGCTATGGGAGGAGGTTCTGAGGAAGATGCTCCCTGTGGGTGCTCCATTGCCCGACGAAGAACATCTTGATTACTCGATCGCAGTCGAATACGAGGGCCCTCCGGTGCCATATCGAGTCCCTATAGTTGATCCTTTGGATGTTGATTCTCTCTCTATTCGCAGTTCTTCCATGGTTTCTGTTTCGGCGTCGGACCTTCAGTCGATTCCAGTTGCCGCCCCAATACTGCCGGTGGTGAAGGTAACAAACTATTCGAGGTTCAATCGAGTCAGAAATGGAGCGTCTTTGAGGGAACTACGGAGTCCGGTGGAGAGTGGGCGGTCTTCGTCCTCAGTGTGGAGAGGTCAATTGGGATCGCGGAACAGCGAGGTCGAAGATTCGGATTGCGGAAATGGAAGGGGCGAGCTGTTCAGTTCGGCCTCATCGGTTCAGGATCCAAATTCAGTATCCACTTCGACTCTCGCAAGTTTGAAACCTGTGGCAGAAGGGAGACGATCTACTATGGTGACGTTCAATGTGGCCAGAGAGTCTGAGATTGATGAAGATGAGTTTTCTTCACCGCGGTCTAGTGTTCCTGATGCCACAGATTCGCCAATTATGTTACGGAATCAAGAGAAGGGGACAAGGAAAAGAGGTGTTTGTAGCAGATGTGGCAAAAGGAACAGGTTGAAGGAGAGGGAGGCTTGCATTGTATGTGATGCGAGATATTGTAAAAATTGTCTGCTTAAGGCGATGGGCTCAATGCCAGAGGGTCGGAAATGTGTTAGTTGCCTAGGGCAGCCTATAAACGAGTCAAAGAGGTCCAGTTTGGGTAAATATTCTAGAATGCTGTCCAAGGCATGCAGTCCTTTAGAAGTTGGGCAGATAATGAAGGCTGAGAAGGAATGCTTGGCAAATCAGCTTCGTCCTGAGCAGCTTATTGTGAATGGGAGACAGCTACGGCAAGAGGAGTTGGCTGAGGTTTTAGGTTGCTCAATCCCTCCGCAGAAGTTGAAGCCTGGGAGGTATTGGTATGATAAGGATTCAGGCCTCTGGGGAAAGGAGGGAGAAAAACCCGATCGGATTATAAGCTCAAAATTGAATATTGGGGGTAAGTTGCAGTTGGATGCTAGCAATGGGAGCACAAAAGTCTTCATAAATGGGCGTGAAATTACGAAGATTGAGCTGAGAGTATTAAAGATGGCCAATGTACAGTGCCCTAGGGATACTCACTTTTGGTTGTATGATGATGGATCTTATGAAGAAGAAGGTCAAAATAACATAAAAGGAAACATATGGGGAAAGGCATCCACTCGTTTCATTTGTTCATTATTTTCATTGCCTGTACCACCTGGAATTTTCCAAGGGCCAAAAGAAGATCCAACTGCATTTTCAAGTAGATCTGTGCCTGAGTATTTGGAGCAGGGAAGAGTTCAGAAACTTCTGTTGTTTGGGTTGGAAGGATCTGGAACCAGCACTCTCTTCAAGCAGGCAAAGTATTTATATGGAAACAAGTTCACTCCACAAGAGCTTCAGAGTATCAAACTTATGATTCAAAGTAATATGTACAAGTATCTCAGCCTCTTACTTGAGGGACGCGAACGATTTGAAGAGGAGGCTTTGATGGAAAGAAAAAATAATGTTTCAGATGCTGAAGGGTCTGATCCAGGTGAAACAGGAGTTGATCAAAGTAAGCCATGCATCTATTCAATCAACCAAAAGTTCAAACATTTTTCTGACTGGTTACTGGGAATCATGGCTATGGGAGACTTGGATGCTATTTTCCCTGCCGCAACACGTGAATATGCTCCTCTTGTAGACGAGCTTTGGAAGGATCCTGCCATCCAGGAAACTTACAAGAGAAGAGAGGAATTGCTTTTTCTTCCTGATGTTGCTAAATACTTCTTGGATCGGGCTATTGAGATATCAAGCAATGAGTATGAACCTTCACAGAAAGACATTTTATATGCTGAAGGAGTCACTCAGAGCAATGGTCTTGCCTTCATGGAATTCTCATTTGATGATCGAAGTCCCATGTCTGAGACATATAACGAGAATTTGGAATGCCCACCTCCATCGTCCAAGTACCAACTAATCCGAATAAATTCCAAGGGATTGCATGATGGGTGCAAATGGCTGGACATGTTTGAGGATGTAAGGGCAGTGATTTTCTGTGTTGCTTTAAGTGACTATGACCACATGTACACTGATAGTGCGGGTTCTCTTTATAATAAAATGCTGGCAAGCAGAGATTTGTTTGAGAGTTTGGTGAGGCACCCTTGCTTTATAGACACCCGTTTTGTGCTCCTCCTTAACAAATATGATGCATTTGAAGAAAAGATAAACCGTTCTCCATTAGCAGTTTGTGAATGGTTTTGGGAGTTTAGTCCGGTGAGGCCCCATCACAACAATCAGTCGTTGGCACACCAAGCTTATTACTATGTGGCAATGAAATTCAAAGATCTGTATCATTCCATCAGTAGTCGGAAGTTGTTTGTGTGGAAGACCAGGGCCCGGGAGCCCAGCTCAGTGGATGAGGCATTCAAGTTTATAAGGGAGGTTCTCAAGTGGGAAGAAGACAAGGATGATAACACGTATGACATAACTGGGGATGAATCATTTTACAGTACAGAACCAAGTTCCTCTCCTTATATTAGGCAAGAGTAG 2670 0.4494 MASDVEGEKLWEEVLRKMLPVGAPLPDEEHLDYSIAVEYEGPPVPYRVPIVDPLDVDSLSIRSSSMVSVSASDLQSIPVAAPILPVVKVTNYSRFNRVRNGASLRELRSPVESGRSSSSVWRGQLGSRNSEVEDSDCGNGRGELFSSASSVQDPNSVSTSTLASLKPVAEGRRSTMVTFNVARESEIDEDEFSSPRSSVPDATDSPIMLRNQEKGTRKRGVCSRCGKRNRLKEREACIVCDARYCKNCLLKAMGSMPEGRKCVSCLGQPINESKRSSLGKYSRMLSKACSPLEVGQIMKAEKECLANQLRPEQLIVNGRQLRQEELAEVLGCSIPPQKLKPGRYWYDKDSGLWGKEGEKPDRIISSKLNIGGKLQLDASNGSTKVFINGREITKIELRVLKMANVQCPRDTHFWLYDDGSYEEEGQNNIKGNIWGKASTRFICSLFSLPVPPGIFQGPKEDPTAFSSRSVPEYLEQGRVQKLLLFGLEGSGTSTLFKQAKYLYGNKFTPQELQSIKLMIQSNMYKYLSLLLEGRERFEEEALMERKNNVSDAEGSDPGETGVDQSKPCIYSINQKFKHFSDWLLGIMAMGDLDAIFPAATREYAPLVDELWKDPAIQETYKRREELLFLPDVAKYFLDRAIEISSNEYEPSQKDILYAEGVTQSNGLAFMEFSFDDRSPMSETYNENLECPPPSSKYQLIRINSKGLHDGCKWLDMFEDVRAVIFCVALSDYDHMYTDSAGSLYNKMLASRDLFESLVRHPCFIDTRFVLLLNKYDAFEEKINRSPLAVCEWFWEFSPVRPHHNNQSLAHQAYYYVAMKFKDLYHSISSRKLFVWKTRAREPSSVDEAFKFIREVLKWEEDKDDNTYDITGDESFYSTEPSSSPYIRQE* 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1034 889 MobiDBLite consensus disorder prediction 870 889 - -
Vvi17g1034 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 859 IPR027417 -
Vvi17g1034 889 SUPERFAMILY Transducin (alpha subunit), insertion domain 507 658 IPR011025 GO:0007165
Vvi17g1034 889 MobiDBLite consensus disorder prediction 142 158 - -
Vvi17g1034 889 Gene3D - 677 864 IPR027417 -
Vvi17g1034 889 MobiDBLite consensus disorder prediction 110 133 - -
Vvi17g1034 889 Pfam G-protein alpha subunit 478 855 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g1034 889 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 253 859 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g1034 889 CDD G-alpha 480 859 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g1034 889 Gene3D - 509 659 IPR011025 GO:0007165
Vvi17g1034 889 PRINTS Alpha G protein (transducin) signature 648 670 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g1034 889 PRINTS Alpha G protein (transducin) signature 768 777 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g1034 889 PRINTS Alpha G protein (transducin) signature 720 748 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g1034 889 PRINTS Alpha G protein (transducin) signature 481 496 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g1034 889 ProSiteProfiles G-alpha domain profile. 478 867 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g1034 889 MobiDBLite consensus disorder prediction 187 206 - -
Vvi17g1034 889 MobiDBLite consensus disorder prediction 869 889 - -
Vvi17g1034 889 SMART galpha_1 459 866 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g1034 889 MobiDBLite consensus disorder prediction 106 158 - -
Vvi17g1034 889 FunFam Extra-large guanine nucleotide-binding protein 3 508 659 - -
Vvi17g1034 889 FunFam Extra-large guanine nucleotide-binding protein 3 673 865 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1034 Vvi-Chr17 13182734 13231970 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1034 - - vvi:100242391 1765.74