Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi17g1043 . . . . . . Aed7g0387 . . . . . . . . . . . Apr6g0893 . . . . . . . . . . . Cca08g00412 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja2g2355 . . Mal6g3549 . . . . . . . Mtr6g2028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr2g5139 . . . Tsu06g03501 . . . . . . . . . . Vra1g0797 .
Vvi17g1044 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1045 . . . . . . Aed7g0386 . . . . . . . . . . . Apr6g0894 . . . . . . . . . . . Cca08g00411 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja2g2354 . . Mal6g3548 . . . . . . . Mtr6g2024 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr2g5143 . . . Tsu06g03504 . . . . . . . . . . Vra1g0796 .
Vvi17g1046 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1047 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1048 . . . . . . . . . . . . . . . . . . Apr6g0895 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja2g2349 . . . . . . . . . . Mtr6g2023 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr2g5144 . . . Tsu06g03505 . . . . . . . . . . . .
Vvi17g1049 . . . . . . Aed7g0385 . . . . . . . . . . . Apr6g0896 . Arst5g02803 . Bach1g01352 . . . . . . . Cca08g00410 . . . . . . . . . . . . . . . . . Lal8g0511 . . . . . Lan10g0496 . . . . . Lapu4g00380 . Lasa1g02222 . . . . . . . . . Lja2g2345 . . Mal6g3546 Mepo7g00695 . Mesa22g02940 . . . . Mtr6g2022 Phac4g01785 . . . . . . . Pste9g01340 . Pte16g00235 . . . . . Pvu4g1459 . . . . . Spst4g02962 . . . . . . Tpr2g5145 Trre11g01760 . . Tsu06g03506 . . . . Vimu8g01787 . . . Vivi2g05817 . Vra1g0795 .
Vvi17g1050 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1051 . . . . . . . . . . . . . . . . . . Apr6g0897 . Arst5g02824 . Bach1g01357 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal25g0521 . . . . . . . . . Lapu4g00369 . Lasa1g02215 . . . . . . . . . Lja2g2343 . . Mal6g3545 Mepo7g00705 . Mesa22g02928 . . . . Mtr6g2020 Phac4g01786 . Phco5g00453 . . . . . Pste9g01343 . Pte16g00238 . . . Pumo6g02835 . Pvu4g1467 . Rops5g00551 . Seca10g04517 . Spst4g02953 . . . . . . Tpr2g5147 Trre11g01768 . . Tsu06g03507 Vian8g01290 . Vifa1g03708 . Vimu8g01774 . Viun4g00607 . Vivi2g05836 . . .
Vvi17g1052 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi17g1043 Chr17 13578093 13588412 +
Aed Aed7g0387 Chr7 2863420 2864067 -
Apr Apr6g0893 Chr6 13410569 13411168 -
Cca Cca08g00412 Chr08 6270230 6270979 +
Lja Lja2g2355 Chr2 28369625 28370236 +
Mal Mal6g3549 Chr6 104428991 104429614 +
Mtr Mtr6g2028 Chr6 36728844 36729594 +
Tpr Tpr2g5139 Chr2 57425980 57426682 -
Tsu Tsu06g03501 Chr06 46148270 46148968 -
Vra Vra1g0797 Chr1 9446944 9447635 -
Vvi Vvi17g1044 Chr17 13601784 13602134 -
Vvi Vvi17g1045 Chr17 13671504 13671863 +
Aed Aed7g0386 Chr7 2862427 2863056 +
Apr Apr6g0894 Chr6 13414397 13414999 -
Cca Cca08g00411 Chr08 6268577 6269332 -
Lja Lja2g2354 Chr2 28366192 28367179 +
Mal Mal6g3548 Chr6 104425466 104426110 +
Mtr Mtr6g2024 Chr6 36695923 36696841 -
Tpr Tpr2g5143 Chr2 57455173 57455961 -
Tsu Tsu06g03504 Chr06 46157569 46158171 +
Vra Vra1g0796 Chr1 9442807 9443599 +
Vvi Vvi17g1046 Chr17 13677843 13678031 +
Vvi Vvi17g1047 Chr17 13685101 13685812 -
Vvi Vvi17g1048 Chr17 13764390 13764749 +
Apr Apr6g0895 Chr6 13415917 13416522 +
Lja Lja2g2349 Chr2 28351972 28352622 +
Mtr Mtr6g2023 Chr6 36692694 36693488 +
Tpr Tpr2g5144 Chr2 57458624 57459438 -
Tsu Tsu06g03505 Chr06 46170037 46170791 +
Vvi Vvi17g1049 Chr17 13780794 13793360 +
Aed Aed7g0385 Chr7 2859353 2859958 -
Apr Apr6g0896 Chr6 13420116 13420763 -
Arst Arst5g02803 Chr5 83353817 83354437 -
Bach Bach1g01352 Chr1 26944985 26945602 -
Cca Cca08g00410 Chr08 6265271 6266228 -
Lal Lal8g0511 Chr8 3504446 3505075 -
Lan Lan10g0496 Chr10 3865045 3865945 -
Lapu Lapu4g00380 Chr4 3814053 3814657 +
Lasa Lasa1g02222 Chr1 247720123 247720770 -
Lja Lja2g2345 Chr2 28284550 28285343 -
Mal Mal6g3546 Chr6 104350361 104350972 -
Mepo Mepo7g00695 Chr7 11348615 11349366 -
Mesa Mesa22g02940 Chr22 77794832 77795473 +
Mtr Mtr6g2022 Chr6 36687990 36688789 -
Phac Phac4g01785 Chr4 44984501 44985107 -
Pste Pste9g01340 Chr9 12123211 12123892 -
Pte Pte16g00235 Chr16 2927740 2930427 +
Pvu Pvu4g1459 Chr4 41659489 41660089 -
Spst Spst4g02962 Chr4 69168883 69169491 +
Tpr Tpr2g5145 Chr2 57464395 57465139 -
Trre Trre11g01760 Chr11 17158579 17159220 -
Tsu Tsu06g03506 Chr06 46176559 46177203 +
Vimu Vimu8g01787 Chr8 23692378 23692983 +
Vivi Vivi2g05817 Chr2 187938931 187939845 +
Vra Vra1g0795 Chr1 9436657 9437496 -
Vvi Vvi17g1050 Chr17 13828738 13828893 -
Vvi Vvi17g1051 Chr17 13836304 13836915 +
Apr Apr6g0897 Chr6 13423907 13424548 -
Arst Arst5g02824 Chr5 83684048 83684904 +
Bach Bach1g01357 Chr1 27032504 27033130 +
Lal Lal25g0521 Chr25 3729924 3730547 -
Lapu Lapu4g00369 Chr4 3773978 3774856 -
Lasa Lasa1g02215 Chr1 247374837 247375454 -
Lja Lja2g2343 Chr2 28137193 28137819 +
Mal Mal6g3545 Chr6 104339163 104339792 -
Mepo Mepo7g00705 Chr7 11383061 11383705 -
Mesa Mesa22g02928 Chr22 77598784 77599395 -
Mtr Mtr6g2020 Chr6 36676366 36677233 -
Phac Phac4g01786 Chr4 44992556 44993275 +
Phco Phco5g00453 Chr5 4169684 4170301 -
Pste Pste9g01343 Chr9 12147123 12166720 -
Pte Pte16g00238 Chr16 2951855 2952493 -
Pumo Pumo6g02835 Chr6 67850365 67850994 -
Pvu Pvu4g1467 Chr4 41714841 41715811 +
Rops Rops5g00551 Chr5 9083227 9087687 +
Seca Seca10g04517 Chr10 103206462 103207106 -
Spst Spst4g02953 Chr4 69148030 69148653 -
Tpr Tpr2g5147 Chr2 57497304 57505120 +
Trre Trre11g01768 Chr11 17195483 17198239 +
Tsu Tsu06g03507 Chr06 46189840 46190457 +
Vian Vian8g01290 Chr8 31790951 31791592 -
Vifa Vifa1g03708 Chr1 574522600 574523214 +
Vimu Vimu8g01774 Chr8 23640817 23641458 +
Viun Viun4g00607 Chr4 3966278 3967045 +
Vivi Vivi2g05836 Chr2 188160507 188161402 +
Vvi Vvi17g1052 Chr17 13861398 13861574 -