Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1857 ATGCGCTTGATGTTTCTGAACTGCGATGCTACGAGCACCGGAGCAGTGGTGTCAGAACCGCCGTGGACGCCATCGGAGGAGTTTCCTCCAGAGGAAAAGGAGCGAACAAAAAAGTCGACCACAGTCTCGCACATCATTCTCTTCACCGATTTCCTGGGAGCAGGAATCATGGATGCCATGGTCTTGAACTCGCGAAACTCAGATTTGGCTGCCGACGGCCTAGCAAGACTCCAGATTATGCGAAGCATCGAAGAGCGAGGGAAGGGTAGGACGAAGACGAGAAGAATCGGAAGAGAGAGGGAAATGAAAGTGACGTGGAAGAACAGCAAGAAACGCTCTTTGCCGGCGGTGTCCAACTTCAGTAACCTTCCTTTCGAGCATCAAGAGGAGGATGTGACTCCTCATCAAGACCTTGCTCGTTTTCAGGGCAATAAAGATGCCGAGATCGGTGCTCCTAACCCTGACCAATCCGAAGACCAAGATAGTACCCATCACTCCGACGTATCGGAAGCAAGACGTCTGGCCAAAGAATTTCAAGCTCAGGCAGACAAGCTTGCTGAGGATGGGAAGTACGGGGAAGCATTAGGTAAATGGGAGTCTGCTCTGTCATTGACACCTGAAGTTGCGGTTTTACATGAACAGAAGGCCCAAGTTCTACTGGAAATTGGAGATGCTTGGAATGCTTTGAAGGCTGCAATGCGAGCTACGGAATTGCAGCCATCATGGGCTGAGGCATGGGTCACACTTGGCAGGGCACAGCTAAATTTTGGCGAGCCTGATTGTGCCATCGAGAGCTTTGACAGAGCCCTATCTATCAAGCCTGATTGCGCAGATGCTCAAGAAGACGGAAAAACTGCATTACGTCTTGTAAAGAAGAGAAAGCAACTCCACTCAGCAGGCTTGAGTGATACTAAAAGTCGTTATGCGGTAGGTGATAAAGATTAA 945 0.4984 MRLMFLNCDATSTGAVVSEPPWTPSEEFPPEEKERTKKSTTVSHIILFTDFLGAGIMDAMVLNSRNSDLAADGLARLQIMRSIEERGKGRTKTRRIGREREMKVTWKNSKKRSLPAVSNFSNLPFEHQEEDVTPHQDLARFQGNKDAEIGAPNPDQSEDQDSTHHSDVSEARRLAKEFQAQADKLAEDGKYGEALGKWESALSLTPEVAVLHEQKAQVLLEIGDAWNALKAAMRATELQPSWAEAWVTLGRAQLNFGEPDCAIESFDRALSIKPDCADAQEDGKTALRLVKKRKQLHSAGLSDTKSRYAVGDKD 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1857 314 MobiDBLite consensus disorder prediction 145 170 - -
Lele27g1857 314 ProSiteProfiles TPR repeat region circular profile. 243 275 - -
Lele27g1857 314 ProSiteProfiles TPR repeat profile. 243 276 IPR019734 GO:0005515
Lele27g1857 314 PANTHER OSMOSIS RESPONSIVE FACTOR 102 313 - -
Lele27g1857 314 Pfam Tetratricopeptide repeat 243 280 - -
Lele27g1857 314 SUPERFAMILY TPR-like 175 292 IPR011990 GO:0005515
Lele27g1857 314 SMART tpr_5 243 276 IPR019734 GO:0005515
Lele27g1857 314 SMART tpr_5 209 242 IPR019734 GO:0005515
Lele27g1857 314 SMART tpr_5 175 208 IPR019734 GO:0005515
Lele27g1857 314 Coils Coil 168 188 - -
Lele27g1857 314 Gene3D Tetratricopeptide repeat domain 165 308 IPR011990 GO:0005515
Lele27g1857 314 MobiDBLite consensus disorder prediction 17 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1857 Lele-ChrLele27 23380674 23385194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1857 174 290 Glycosyltransferase AT3G04240 27.350 6.51e-07 48.9