Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04060 ATGAAAGTGACTTGGAAAACCAAGAAGAAGAAACCGTTATCACACTTCACCAACCTTCCCTTTGAACACGACAACGACCAATCCAATTCACACACTACCCAACATGATTCTGATACAACAACAACACTACGTTCTCCCAATTCCGATCAATCAACACAATTAGCTCTGCAATTTCAATCTCAAGGAGACAACCTTGCTATGGAGGGGAAGTATAGGGAAGCACTGGGTAAATGGGAAGCTGCTCTTACATTGGCACCCGATGTTCCAGCTTTGCATGAACAAAAGGCCCAAGTTTTACTAGAAATTGGAGAACCTTGGACTGCTTTAAAGGCTGCAACCCGAGCTACTGAATTGAAGCCATCGTGGGCCGAGGCTTGGGTCACACTTGGCAGAGCACAGCTTAATTATGGCGAACCGGATAATGCTATTGAAAGCTTTGACCGAGCTTTAGCTCTCAAGCCTGATTATGAGGAAGCGCAAGATGATAGAAAAGCTGCATCACGTCTTGTAAAGAAGAGAAAGCAACTTCACTTATCAGGCTTGAGTGCTACTCAAAATCGTTATACTGTAGGCGATAAGAATGAAAGCTCGTGA 594 0.4411 MKVTWKTKKKKPLSHFTNLPFEHDNDQSNSHTTQHDSDTTTTLRSPNSDQSTQLALQFQSQGDNLAMEGKYREALGKWEAALTLAPDVPALHEQKAQVLLEIGEPWTALKAATRATELKPSWAEAWVTLGRAQLNYGEPDNAIESFDRALALKPDYEEAQDDRKAASRLVKKRKQLHLSGLSATQNRYTVGDKNESS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04060 197 MobiDBLite consensus disorder prediction 1 53 - -
Vifa3g04060 197 MobiDBLite consensus disorder prediction 20 53 - -
Vifa3g04060 197 Pfam Tetratricopeptide repeat 123 156 IPR001440 GO:0005515
Vifa3g04060 197 Gene3D Tetratricopeptide repeat domain 45 187 IPR011990 GO:0005515
Vifa3g04060 197 SUPERFAMILY TPR-like 52 173 IPR011990 GO:0005515
Vifa3g04060 197 SMART tpr_5 89 122 IPR019734 GO:0005515
Vifa3g04060 197 SMART tpr_5 55 88 IPR019734 GO:0005515
Vifa3g04060 197 SMART tpr_5 123 156 IPR019734 GO:0005515
Vifa3g04060 197 ProSiteProfiles TPR repeat region circular profile. 123 155 - -
Vifa3g04060 197 PANTHER OSMOSIS RESPONSIVE FACTOR 1 196 - -
Vifa3g04060 197 ProSiteProfiles TPR repeat profile. 123 156 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04060 62 169 EF-hand Containing Proteins AT2G32450 35.185 6.72e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04060 - - gmx:100305761 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04060 3 1196601642 1196608716 Vifa3g04060 3 1196601642 1196608716 ECH