Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0958 ATGGGTTTACCTTGGTATCGTGTTCATACTGTTGTATTAAATGATCCAGGCCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTGGTTGCTGGTTGGGCCGGTTCGATGGCCCTATATGAATTAGCAGTTTTTGATCCCTCTGACCCTGTTCTTGACCCAATGTGGAGACAGGGTATGTTCGTTATACCTTTCATGACTCGTTTAGGAATAACCAATTCGTGGGGCGGTTGGAATATCACAGGAGGGACTATAACGAATCCGGGTATTTGGAGTTACGAAGGTGTGGCCGGAGCACATATTATGTTTTCGGGCTTGTGCTTTTTAGCGGCGATTTGGCATTGGGTTTATTGGGATCTAGAAATCTTTAGTGATGAACGTACTGGAAAACCTTCTTTGGATTTGCCCAAAATTTTCGGAATTCATTTATTTCTTGCAGGGGTGGCTTGTTTTGGTTTTGGCGCATTTCATGTAACAGGATTATATGGTCCTGGAATATGGGTGTCCGATCCTTATGGACTAACTGGAAGGATACAATCCGTAAATCCCGCGTGGGGCGTGGAAGCTTTTGTCGTTGCTGGAACTATGTGGTATGGTTCCGCAACAACCCCTATTGAATTATTCGGTCCTACTCGTTATCAATGGGATCAGGGATACTTCCAGCAAGAAATATATCGAAGAGTTGGTGCTGGACTAGCCGAAAATCAAAGTTTATCAGAAGCTTGGTCTAAAATTCCCGAAAAATTAGCTTTTTATGATTACATCGGAAATAATCCAGCAAAAGGGGGGTTATTTAGAGCAGGTTCAATGGACAATGGAGATGGAATAGCCGTCGGTTGGTTAGGACACCCTGTCTTTAGAGATAAAGAGGGGCATGAGCTTTTTGTACGTCGTATGCCTACTTTTTTTGAAACATTTCCAGTTGTTTTGGTAGACGGGGACGGAATTGTTAGGGCCGATGTTCCTTTTCGAAGGGCAGAATCCAAATATAGTGTCGAACAAGTAGGTGTAACTGTTGAGTTCTATGGTGGCGAGCTTAATGGAACCAATTATAGTGATCCCGCTACTGTGAAAAAATATGCTAGACGTGCTCAATTGGGTGAAATTTTTGAATTAGATCGTGCTACTTTGAAATCAGATGGTGTTTTTCGTAGCAGTCCGAGGGGTTGGTTTACTTTTGGACATGCTTCATTTGCTCTGCTATTCTTTTTCGGGCACATTTGGCATGGTGCTAGAACTTTGTTCAGAGATGTTTTTGCTGGTATCGACCCAGATTTAGATACTCAAGTAGAATTTGGAGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGACAGGCAGTCTAA 1347 0.4246 MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWNITGGTITNPGIWSYEGVAGAHIMFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLAGVACFGFGAFHVTGLYGPGIWVSDPYGLTGRIQSVNPAWGVEAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVGAGLAENQSLSEAWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPVFRDKEGHELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESKYSVEQVGVTVEFYGGELNGTNYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDTQVEFGAFQKLGDPTTKRQAV 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0958 448 PANTHER PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN 1 190 IPR000932 GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684
Aed6g0958 448 SUPERFAMILY Photosystem II antenna protein-like 2 428 IPR036001 GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684
Aed6g0958 448 Pfam Photosystem II protein 188 440 IPR000932 GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684
Aed6g0958 448 Pfam Photosystem II protein 1 190 IPR000932 GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684
Aed6g0958 448 Gene3D Photosystem II CP47 reaction center protein 212 384 - -
Aed6g0958 448 PANTHER PHOTOSYSTEM II CP47 REACTION CENTER PROTEIN 1 190 - -
Aed6g0958 448 PANTHER PHOTOSYSTEM II CP47 REACTION CENTER PROTEIN 189 446 - -
Aed6g0958 448 PANTHER PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN 189 446 IPR000932 GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0958 Aed-Chr6 12454505 12456035 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0958 K02704 - csin:14412451 822.772