Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0686 ATGAAAGTGACTTGGAAGAACAACAAGAACAAGAAACGTTGTTTACCCACGTTGTCTCACTTCACTGACCTTCCCTTTGAGCATCACGACGAACCCCATTCACAAGATGGCGTGCCTATTCCCGATCCTGACCAATCTCGCGCTGCACAATTGGCGAATGAATTTCAAGCTCAAGGAGACAAGCTCGCTATGGATGGGAAGTACCAGGAAGCACTAAGTAAATGGGAAGCTGCTCTTGCGTTGGCACCTGATGTTCCAATTTTGCATGAACAGAAAGCCCAAATTTTACTAGAAATTGGAGACACTTGGAATGCTTTAAAGGCTGCAACTCGAGCGACTGAATTGGACCCATCATGGGCTGAGGCATGGGTCACACTTGGCAGAACACAACTGAATTTTGGTGAGCCAGATAATGCTATTGAGAGCTTTGATCGAGCTTTAGCTCTCAAGCCTGATTATGAGGAAGCTAAAGATGATAGGAAAACCTCTTTACATCTTGTAAAGAAGAGAAAGCAGCTTCATTCATCTGGCCTGAGTGCTACTCAAAATCGTTATGTGGTGGGTGAAAAGGATGAAAGCCAGTGA 585 0.4496 MKVTWKNNKNKKRCLPTLSHFTDLPFEHHDEPHSQDGVPIPDPDQSRAAQLANEFQAQGDKLAMDGKYQEALSKWEAALALAPDVPILHEQKAQILLEIGDTWNALKAATRATELDPSWAEAWVTLGRTQLNFGEPDNAIESFDRALALKPDYEEAKDDRKTSLHLVKKRKQLHSSGLSATQNRYVVGEKDESQ* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0686 194 MobiDBLite consensus disorder prediction 23 37 - -
Pvu1g0686 194 MobiDBLite consensus disorder prediction 171 194 - -
Pvu1g0686 194 SUPERFAMILY TPR-like 50 171 IPR011990 GO:0005515
Pvu1g0686 194 Pfam Tetratricopeptide repeat 92 153 - -
Pvu1g0686 194 MobiDBLite consensus disorder prediction 174 188 - -
Pvu1g0686 194 ProSiteProfiles TPR repeat region circular profile. 120 152 - -
Pvu1g0686 194 ProSiteProfiles TPR repeat profile. 52 85 IPR019734 GO:0005515
Pvu1g0686 194 PANTHER OSMOSIS RESPONSIVE FACTOR 1 192 - -
Pvu1g0686 194 SMART tpr_5 86 119 IPR019734 GO:0005515
Pvu1g0686 194 SMART tpr_5 52 85 IPR019734 GO:0005515
Pvu1g0686 194 SMART tpr_5 120 153 IPR019734 GO:0005515
Pvu1g0686 194 MobiDBLite consensus disorder prediction 23 45 - -
Pvu1g0686 194 Gene3D Tetratricopeptide repeat domain 42 186 IPR011990 GO:0005515
Pvu1g0686 194 ProSiteProfiles TPR repeat profile. 120 153 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0686 Pvu-Chr1 8555553 8560503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0686 40 164 EF-hand Containing Proteins AT2G32450 29.600 8.61e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0686 - - pvu:PHAVU_001G066600g 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0686 1 8555553 8560503 Pvu1g0686 1 8555553 8560503 ECH