Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02381 ATGAAAGTGACTTGGAAGAACAACAAAAAGAAACGTTGTTTACCCACGTTGTCTCACTTCACTGACCTTCCCTTTGAGCATAACGACCAACCCCATTCAGAAGATGGCGCGCGTGTTCCCGATCCTGACCAATCTCGCGCTGCACAATTGGCGAATGAATTTCAAGCTCAAGGAGATAAGCTGGCTGTGGATGGGAAGTACCAGGAAGCACTAAGTAAATGGGAGGCTGCTCTTGCGTTGGCACCTGATGTTCCAATTTTGCATGAACAAAAAGCCCAAGTTTTACTAGAAATTGGAGACACTTGGAATGCTTTAAAGGCTGCAACTCGAGCGACTGAATTGGACCCATCATGGGCTGAGGCTTGGGTCACACTTGGCAGAACACAACTGAATTTTGGTGAGCCTGATAATGCTATTGAAAGCTTTGACCGAGCTTTAGCTCTCAAGCCTGATTACGAGGAAGCTAAAGAAGATAGGAAAACCTCTTTACATCTTGTAAAGAAGAGAAAGCAACTTCATTCATCTGGCTTGAGTGACACTCAAAATCGTTATGTGGTGGGTGAAAAGGATGAAAGCCAGTGA 582 0.4502 MKVTWKNNKKKRCLPTLSHFTDLPFEHNDQPHSEDGARVPDPDQSRAAQLANEFQAQGDKLAVDGKYQEALSKWEAALALAPDVPILHEQKAQVLLEIGDTWNALKAATRATELDPSWAEAWVTLGRTQLNFGEPDNAIESFDRALALKPDYEEAKEDRKTSLHLVKKRKQLHSSGLSDTQNRYVVGEKDESQ 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02381 193 Pfam Tetratricopeptide repeat 91 152 - -
Vimu1g02381 193 MobiDBLite consensus disorder prediction 25 41 - -
Vimu1g02381 193 ProSiteProfiles TPR repeat region circular profile. 119 151 - -
Vimu1g02381 193 PANTHER OSMOSIS RESPONSIVE FACTOR 1 192 - -
Vimu1g02381 193 MobiDBLite consensus disorder prediction 21 44 - -
Vimu1g02381 193 Gene3D Tetratricopeptide repeat domain 41 189 IPR011990 GO:0005515
Vimu1g02381 193 ProSiteProfiles TPR repeat profile. 119 152 IPR019734 GO:0005515
Vimu1g02381 193 SMART tpr_5 119 152 IPR019734 GO:0005515
Vimu1g02381 193 SMART tpr_5 85 118 IPR019734 GO:0005515
Vimu1g02381 193 SMART tpr_5 51 84 IPR019734 GO:0005515
Vimu1g02381 193 SUPERFAMILY TPR-like 49 170 IPR011990 GO:0005515
Vimu1g02381 193 MobiDBLite consensus disorder prediction 170 193 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02381 37 163 EF-hand Containing Proteins AT2G32450 29.134 4.14e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02381 - - gmx:100305761 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02381 1 34443601 34448122 Vimu1g02381 1 34443601 34448122 ECH