Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2028 ATGTCCCGCAACCTCCATGAGGCATCCATGTCCGAAAGACATGAGCAGTGGATGAAAAAATATGGTAAAGTATATAAGGATGCTGAAGAGAAGCAAAAACGTTTCTTGATATTCAAGGACAATGTTGAATTCATTGAATCTTTCAATGTTGCTGGGTACAAACCTTACAAGCTTGGCATCAATCACCTAGCTGACAAAACCAATGAGGAATTTATGGCTTCCCATAACGGGTACAAGACGTCACAAGGACTAAGAAACACAGCACAAACACCATTCAAGTATGAAAACGTTACTGATATTCCTACTGCAGTGGATTGGAGGCAGAAAGGAGCTGTTAGTCCAATCAAGGATCAAGGCAATTGTGGTAGCTGCTGGGCATTTTCAACAGTTGCTGCAGCAGAAGGTATCTACCAAATAACCACAGCTAATCTAGTTTCCCTATCAGAGCAAGAGTTAGTGGATTGTGATAGGGTGGATCATGGATGTGAGGGAGGTGTTACGGAAAATGGCTTtgaattcattataaaaaatggtgGAATCACAAGTGAGGCAGACTACCCCTACACAGCAGTTGATGGGACTTGTGACACAAGCAAAGAGGCTTCTCCTGCAGCTCGAATAAGGGGGTATGATACAGTACCTGCCAATAGTGAggagcatggttctaaattgcggttgcggtcgctGTTGCGTTTTCATTGA 702 0.3989 MSRNLHEASMSERHEQWMKKYGKVYKDAEEKQKRFLIFKDNVEFIESFNVAGYKPYKLGINHLADKTNEEFMASHNGYKTSQGLRNTAQTPFKYENVTDIPTAVDWRQKGAVSPIKDQGNCGSCWAFSTVAAAEGIYQITTANLVSLSEQELVDCDRVDHGCEGGVTENGFEFIIKNGGITSEADYPYTAVDGTCDTSKEASPAARIRGYDTVPANSEEHGSKLRLRSLLRFH 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2028 233 Pfam Papain family cysteine protease 100 220 IPR000668 GO:0006508|GO:0008234
Ssu3g2028 233 SUPERFAMILY Cysteine proteinases 6 219 IPR038765 -
Ssu3g2028 233 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 118 129 IPR000169 -
Ssu3g2028 233 Pfam Cathepsin propeptide inhibitor domain (I29) 14 71 IPR013201 -
Ssu3g2028 233 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 4 220 - -
Ssu3g2028 233 SMART pept_c1 100 229 IPR000668 GO:0006508|GO:0008234
Ssu3g2028 233 PANTHER PEPTIDASE C1A, CYSTEINE PEPTIDASE, ASPARAGINE ACTIVE SITE PROTEIN-RELATED 4 220 - -
Ssu3g2028 233 Gene3D Cysteine proteinases 2 226 - -
Ssu3g2028 233 SMART Inhibitor_I29_2 14 71 IPR013201 -
Ssu3g2028 233 CDD Peptidase_C1A 101 219 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2028 Ssu-Chr3 66977378 66978184 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2028 - - gmx:100807398 376.711