Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0860 ATGGCTTCCAAAACTCTACTCCACATTACTTCATTTGCATTGGCATTGCTTCTTGTGCTTGGATTCTTAGCTTTTGAGGCCAATGCTCGCACTCTCGAAGATGCTTCAATGCATGAGAGGCATCAGCAATGGATGACTCAGTATGGAAAAGTTTACAAGGACTCTTACGAGATGGAGTTGCGGTACCAGATATTCAAAGAAAATGAATTCAAAGCCAGAAACAGATTCAAGGGTCACATGTGCTCCAATTCTACAAGGACACCAACATTTAAGTATGAACATGTGACATCCGTGCCAGCTTCATTAGATTGGAGGCAGAAAGGAGCTGTCACACCCATTAAGGACCAAGGCCAATGTGGATGTTGCTGGGCATTTTCTGCTGTGGCAGCAACAGAAGGTATCACCAAGCTGAGTACTGGCAAATTGATCTCTTTATCCGAGCAAGAGCTAGTTGATTGTGACACAAAGGGTGTGGACCAAGGTTGTGAAGGGGGTCTAATGGATGATGCCTTCAAATTTATAATGCAAAACAAAGGACTCAACACAGAAGCCAAGTACCCATACAAGGGTGTTGATGCAACATGCAATGCAAATGCAGAAGCCAAAGATGCAGCCAGCATTAAGGGGTTTGAGGATGTCCCTGCCAACAGTGAGAGTGCACTGCTCAAAGCTGTTGCTAATCAACCTATTTCTGTGGCTATTGATGCTAGTGGATCTGAGTTTCAATTTTATTCAAGTGGTGTCTTCACTGGATCATGTGGCACTGAATTGGATCATGGTGTCACTGCTGTTGGGTATGGAAGTGATGGTGGAACCAAATATTGGTTGGTCAAGAATTCATGGGGAGAACAGTGGGGCGAACAAGGATACATTAGGATGCAGAGAGATGTTGCTGCTGAAGAAGGCTTGTGCGGCATTGCAATGCAGGCTTCTTACCCCACTGCATAG 948 0.4483 MASKTLLHITSFALALLLVLGFLAFEANARTLEDASMHERHQQWMTQYGKVYKDSYEMELRYQIFKENEFKARNRFKGHMCSNSTRTPTFKYEHVTSVPASLDWRQKGAVTPIKDQGQCGCCWAFSAVAATEGITKLSTGKLISLSEQELVDCDTKGVDQGCEGGLMDDAFKFIMQNKGLNTEAKYPYKGVDATCNANAEAKDAASIKGFEDVPANSESALLKAVANQPISVAIDASGSEFQFYSSGVFTGSCGTELDHGVTAVGYGSDGGTKYWLVKNSWGEQWGEQGYIRMQRDVAAEEGLCGIAMQASYPTA* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0860 315 Pfam Cathepsin propeptide inhibitor domain (I29) 41 69 IPR013201 -
Lja3g0860 315 Pfam Papain family cysteine protease 98 314 IPR000668 GO:0006508|GO:0008234
Lja3g0860 315 PANTHER - 24 68 - -
Lja3g0860 315 SUPERFAMILY Cysteine proteinases 34 314 IPR038765 -
Lja3g0860 315 SMART pept_c1 98 314 IPR000668 GO:0006508|GO:0008234
Lja3g0860 315 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 274 293 IPR025661 -
Lja3g0860 315 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 116 127 IPR000169 -
Lja3g0860 315 CDD Peptidase_C1A 99 313 IPR039417 -
Lja3g0860 315 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 67 314 - -
Lja3g0860 315 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 24 68 - -
Lja3g0860 315 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 257 267 IPR025660 -
Lja3g0860 315 Gene3D Cysteine proteinases 23 315 - -
Lja3g0860 315 PRINTS Papain cysteine protease (C1) family signature 116 131 IPR000668 GO:0006508|GO:0008234
Lja3g0860 315 PRINTS Papain cysteine protease (C1) family signature 274 280 IPR000668 GO:0006508|GO:0008234
Lja3g0860 315 PRINTS Papain cysteine protease (C1) family signature 259 269 IPR000668 GO:0006508|GO:0008234
Lja3g0860 315 PANTHER - 67 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0860 Lja-Chr3 8708988 8710115 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0860 - K16292 gmx:100778111 499.59