Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01929 ATGAGTTTCCTAAACCATTTCATTATAGCTATGTTTATCATTTTCACAACATGGATTATCCCCCACGTAATATCTACCAGGGTCCTTGAACCATGCTCATCAAATAAACATGAAAAATGGATGGCACAATTTGGAAAGTCTTACAAAGATGATGCAGAGAAAGAAAAACGTTACCAAATATTCAAAAACAATGTAGAGTTCATTGAATTGTTCAATGCTGCTGGAGACAAACCTTTCAACCTTGGTATAAATCATTTTGCAGACCTAAGTAATGAAGAATTTAAGGCTTCACTTAATGGTAAGAAGAAGTTACATAATATTGGGATTGGCAACGTAAAAGAAACATCGTTCAGGTACCACAATGTAACTTCTCTTCCTGCTGCCATGGATTGGAGGAAAAGAGGTGCTGTTACTCCTATCAAAGAACAAGGCACATGTAGTAGTTGTTGGGCATTTTCAAGTGTGGCAGCAACAGAGAGTATCCACCAAATAAGAGGAGGTGAATTAGTATCACTCTCAGAGCAAGAACTAATAGATTGTGTAAAAGGTAATAGTTCAGGTTGCAGTGGTGGTTACATGGAAGATGCATTCGAATTCATTGAGAAGAAAGGAGGAATAGCAAGTGAAGCACAATACCCTTACAAAGAAGCTGATAGAAGTTGTAAGGTTAAGAAAGAAGCAAAACATGTGGCAGCTGTGATTAAAAGATATGAGAAAGTTCCTTCAAATAGTGAAAAAGCACTTGTTAAAGCAGTGGCAAATCAACCTGTTTCTGTTTATGTAGATGGAGGAGGATCTGGTTTTCAATTTTACTCTGGTGGAATATTTACAGGGAAATGTGGAACTGATACTGATCATGCTGTTACTGTAGTTGGTTATGGTGTATCACATGATGGGATGAAATATTGGATTGTGAAAAATTCTTGGGGTAATGATTGGGGTGAGAAAGGATACATGAGGTTGAAGAGAGACATTGGTTCTAAGAAAGGTTTATGTGGAATTGCCACCAATCCCTCTTATCCAGTTGCTTAA 1032 0.3731 MSFLNHFIIAMFIIFTTWIIPHVISTRVLEPCSSNKHEKWMAQFGKSYKDDAEKEKRYQIFKNNVEFIELFNAAGDKPFNLGINHFADLSNEEFKASLNGKKKLHNIGIGNVKETSFRYHNVTSLPAAMDWRKRGAVTPIKEQGTCSSCWAFSSVAATESIHQIRGGELVSLSEQELIDCVKGNSSGCSGGYMEDAFEFIEKKGGIASEAQYPYKEADRSCKVKKEAKHVAAVIKRYEKVPSNSEKALVKAVANQPVSVYVDGGGSGFQFYSGGIFTGKCGTDTDHAVTVVGYGVSHDGMKYWIVKNSWGNDWGEKGYMRLKRDIGSKKGLCGIATNPSYPVA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01929 343 Pfam Cathepsin propeptide inhibitor domain (I29) 37 94 IPR013201 -
Car06g01929 343 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 342 - -
Car06g01929 343 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 284 294 IPR025660 -
Car06g01929 343 CDD Peptidase_C1A 126 341 IPR039417 -
Car06g01929 343 Pfam Papain family cysteine protease 125 342 IPR000668 GO:0006508|GO:0008234
Car06g01929 343 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Car06g01929 343 PRINTS Papain cysteine protease (C1) family signature 286 296 IPR000668 GO:0006508|GO:0008234
Car06g01929 343 PRINTS Papain cysteine protease (C1) family signature 302 308 IPR000668 GO:0006508|GO:0008234
Car06g01929 343 PANTHER SENESCENCE-ASSOCIATED GENE 12 25 342 - -
Car06g01929 343 SMART pept_c1 125 342 IPR000668 GO:0006508|GO:0008234
Car06g01929 343 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 302 321 IPR025661 -
Car06g01929 343 Gene3D Cysteine proteinases 23 343 - -
Car06g01929 343 SUPERFAMILY Cysteine proteinases 35 342 IPR038765 -
Car06g01929 343 SMART Inhibitor_I29_2 37 94 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01929 Car-Chr6 19262789 19264391 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01929 - - gmx:100814159 475.322