Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2029 ATGACTTCCGCGAGCCAAAAACAGTACACGTTAGCTCTGTTTCTCTTCCTTGCAGTTGGGATTTCCCAGGTGATGTCCCGCAAACTGCACGAGACATCCTTGAGAGAAAGGCATGAGCAATGGATGGCAGAATATGGCAAAGTGTATAAGGATGCTGCAGAGAAGGAAAAACGTTTCCTGGTATTCAAGGACAATGTGGAGTTCATTGAATCATTCAATGCTGCTGGCGACAAACCTTACAAGCTTGGCGTTAATCACCTAGCTGACCTCACAGTTGAGGAATTCAAGGCTTCCCGTAATGGATACAAGAGGCCCCATGAGTTTAGCACAACACCATTTAAGTATGAAAATGTGACTGCTGTTCCTGCAGCCATAGACTGGAGGAAAAAAGGAGCTGTTACTCCAATCAAAGACCAAGGACAATGTGGGAGCTGCTGGGCATTTTCAACCGTGGCTGCAACTGAGGGTATCCACCAGATAACCACAGGTAAATTAATCTCCCTCTCAGAACAAGAGCTAGTGGATTGTGACACAAAAGGTGTAGACCAAGGGTGTGAAGGAGGTTACATGGAAGATGGGTTtgaattcattataaaaaatggtgGAATCACCAGTGAGGCTAACTACCCCTACAAGGCAGTTGATGGGACATGTAACAGAGCAGCCTCCCCAGTGGCTCAAATTAAGGGGTATGAGAAAGTTCCTTCGAATAGCGAGAACGCACTCCAAAAAGCTGTGGCCAATCAACCAGTGTCAGTTTCTATTGATGCAAATGGTGCAGGTTTTATGTTTTACTCTAGTGGGATTTACACAGGGGAATGTGGAACTCAGCTAGACCATGGTGTTACCGCAGTTGGTTATGGCACAGCTAATGGAACTGACTATTGGCTAGTGAAGAATTCATGGGGCACACAATGGGGTGAGAAAGGATACGTAAGGATGCAGCGAGGTATAGCTGCCAAGCACGGTTTATGTGGAATTGCCTTGGATTCATCTTATCCAACGGCTTAA 1011 0.452 MTSASQKQYTLALFLFLAVGISQVMSRKLHETSLRERHEQWMAEYGKVYKDAAEKEKRFLVFKDNVEFIESFNAAGDKPYKLGVNHLADLTVEEFKASRNGYKRPHEFSTTPFKYENVTAVPAAIDWRKKGAVTPIKDQGQCGSCWAFSTVAATEGIHQITTGKLISLSEQELVDCDTKGVDQGCEGGYMEDGFEFIIKNGGITSEANYPYKAVDGTCNRAASPVAQIKGYEKVPSNSENALQKAVANQPVSVSIDANGAGFMFYSSGIYTGECGTQLDHGVTAVGYGTANGTDYWLVKNSWGTQWGEKGYVRMQRGIAAKHGLCGIALDSSYPTA 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2029 336 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 278 288 IPR025660 -
Ssu3g2029 336 Pfam Cathepsin propeptide inhibitor domain (I29) 38 95 IPR013201 -
Ssu3g2029 336 SMART Inhibitor_I29_2 38 95 IPR013201 -
Ssu3g2029 336 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 335 - -
Ssu3g2029 336 SUPERFAMILY Cysteine proteinases 30 335 IPR038765 -
Ssu3g2029 336 PRINTS Papain cysteine protease (C1) family signature 280 290 IPR000668 GO:0006508|GO:0008234
Ssu3g2029 336 PRINTS Papain cysteine protease (C1) family signature 139 154 IPR000668 GO:0006508|GO:0008234
Ssu3g2029 336 PRINTS Papain cysteine protease (C1) family signature 295 301 IPR000668 GO:0006508|GO:0008234
Ssu3g2029 336 Gene3D Cysteine proteinases 18 336 - -
Ssu3g2029 336 SMART pept_c1 121 335 IPR000668 GO:0006508|GO:0008234
Ssu3g2029 336 Pfam Papain family cysteine protease 121 334 IPR000668 GO:0006508|GO:0008234
Ssu3g2029 336 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 295 314 IPR025661 -
Ssu3g2029 336 PANTHER SENESCENCE-ASSOCIATED GENE 12 25 335 - -
Ssu3g2029 336 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 139 150 IPR000169 -
Ssu3g2029 336 CDD Peptidase_C1A 122 334 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2029 Ssu-Chr3 66981131 66982673 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2029 - - gmx:100818606 637.491