Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01927 ATGGTTTCCACTAGCCAAAAAAAAATCATATTTTCTCTGTTTCTCCTCTTTGCACTTGGTACTATTACCAATGTAATGTCTCGAAAGCTTCATGAATTATCATCCTTAAAAGAAAGACATGAACAATGGATGATAAAATATGACAAAGTGTATAAAGATGATGCTGAGAAGGAAAAACGTTTCTTGATATTCAAGGACAATGTTGAGTTCATTGAATCATTCAATGCTGACAATAGCAAACTTTACAAGCTTAGTGTTAATCACTTGGCTGATTTGACCATTGAAGAATTTAAGGCTTCACGCAATGGTTACAAGAAGAGGTCTCATGATGAGCTTACAATAACATCATTTAAGTATGAAAATGTTACTGGTGTTCCTGATGATGTAGATTGGAGGACAAAAGGAGCTGTCACTCCAATTAAGGACCAAGGCCAATGTGGGAGCTGCTGGGCATTTTCAACTGTGGCTGCAACTGAGGGTATCAACCAAATAACAACAGGTAAACTAGTATCCCTCTCAGAGCAAGAACTAGTGGATTGTGACACAAAAGGTGAAGACCAAGGTTGTGAAGGAGGACTAATGGAAAATGGTTTTGAGTTCATCATTAAAAATGGTGGAATTACAAGTGAAGCTAAGTACCCATACAAGGCAGCTGATGGAAGTTGTAACACAGCTGAAACCACCCCTGTGGCTAAGATTAAGGGATATGAGAAAGTACCTGTTAATAGTGAGGATGCACTTCTCAAAGCTGTTGCTTACCAACCAGTATCAGTTTCTATTGATGCTAGTGACTCGAGTTTCATGTTTTACTCGAGTGGAATTTATACAGGAGAATGTGGAACTGAGTTAGATCATGGTGTTACTGCTGTTGGTTATGGTAGTGCTAATGGTACTGACTATTGGCTGGTGAAGAATTCATGGGGCACGGTGTGGGGTGAGAAAGGATACATAAGAATGCAAAGAGGCATTGCTTCTAAGGAAGGTTTATGTGGCATTGCCATGGATTCCTCTTATCCAACGGCTTAA 1026 0.3928 MVSTSQKKIIFSLFLLFALGTITNVMSRKLHELSSLKERHEQWMIKYDKVYKDDAEKEKRFLIFKDNVEFIESFNADNSKLYKLSVNHLADLTIEEFKASRNGYKKRSHDELTITSFKYENVTGVPDDVDWRTKGAVTPIKDQGQCGSCWAFSTVAATEGINQITTGKLVSLSEQELVDCDTKGEDQGCEGGLMENGFEFIIKNGGITSEAKYPYKAADGSCNTAETTPVAKIKGYEKVPVNSEDALLKAVAYQPVSVSIDASDSSFMFYSSGIYTGECGTELDHGVTAVGYGSANGTDYWLVKNSWGTVWGEKGYIRMQRGIASKEGLCGIAMDSSYPTA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01927 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 300 319 IPR025661 -
Car06g01927 341 CDD Peptidase_C1A 126 339 IPR039417 -
Car06g01927 341 Gene3D Cysteine proteinases 20 341 - -
Car06g01927 341 PANTHER SENESCENCE-ASSOCIATED GENE 12 27 340 - -
Car06g01927 341 SUPERFAMILY Cysteine proteinases 36 340 IPR038765 -
Car06g01927 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 283 293 IPR025660 -
Car06g01927 341 SMART Inhibitor_I29_2 40 97 IPR013201 -
Car06g01927 341 SMART pept_c1 125 340 IPR000668 GO:0006508|GO:0008234
Car06g01927 341 Pfam Cathepsin propeptide inhibitor domain (I29) 40 97 IPR013201 -
Car06g01927 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 143 154 IPR000169 -
Car06g01927 341 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Car06g01927 341 PRINTS Papain cysteine protease (C1) family signature 285 295 IPR000668 GO:0006508|GO:0008234
Car06g01927 341 PRINTS Papain cysteine protease (C1) family signature 300 306 IPR000668 GO:0006508|GO:0008234
Car06g01927 341 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 26 340 - -
Car06g01927 341 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 27 340 - -
Car06g01927 341 Pfam Papain family cysteine protease 125 339 IPR000668 GO:0006508|GO:0008234
Car06g01927 341 PANTHER PEPTIDASE C1A, CYSTEINE PEPTIDASE, ASPARAGINE ACTIVE SITE PROTEIN-RELATED 26 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01927 Car-Chr6 19250142 19251868 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01927 - - gmx:100802616 541.576