Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2030 ATGTTCCTCGTTCTCACTGTGTGTACATCCCACTCAACGTCTCGCAGGTTGCCTGAGGCCTGCTCATCAGAGAGACATGAGAAGTGGATGGCACAGTATGGTAAGGTTTACAAGGATGTTGCTGAGAaggaaaaacgttttcaaataTTCAAGAACAATGTGCAGTTCATTGAGTCATTCAATGCTGCTGGGGACAAACCTTTCAACCTTAGCATTAACCAATTTGCGGACCTTCATAATGAAGAATTTAAGGCTTTACTAATTAATGGTAAGAAGAAGGCACATGGGGTGGGGACAACAACAGAATCATCGTTTAGGTATGACAGTGTAACTAAGATCCCTGCTACCGTGGACTGGAGGAAAAGAGGTGCTGTCACTCCAATCAAGGACCAAGGCAAATGTCGTAGTTGTTGGACATTTTCAGCTGTGGCTGCGACCGAGGGTATCCACCAGATTACTGCAGCTCAAGTTTTTATTCCTTCTGGTAGAGTTTTTGTTCATGATGGTACTCATGAATGTATGGAAGCTATTCAGTTTAGGCTCAATGGAGAAAATAGTGTGTCAGGTTCTGTGTTTCTTCTTGTTGTCTCATTTGGGCTATGGATGCTTGTTATCCAAACTGTGTTGTATTTTGTTTGCAAGTCCTACCACAGCAAGATTATATGTTGA 669 0.417 MFLVLTVCTSHSTSRRLPEACSSERHEKWMAQYGKVYKDVAEKEKRFQIFKNNVQFIESFNAAGDKPFNLSINQFADLHNEEFKALLINGKKKAHGVGTTTESSFRYDSVTKIPATVDWRKRGAVTPIKDQGKCRSCWTFSAVAATEGIHQITAAQVFIPSGRVFVHDGTHECMEAIQFRLNGENSVSGSVFLLVVSFGLWMLVIQTVLYFVCKSYHSKIIC 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2030 222 SMART Inhibitor_I29_2 26 83 IPR013201 -
Ssu3g2030 222 Pfam Papain family cysteine protease 113 154 IPR000668 GO:0006508|GO:0008234
Ssu3g2030 222 Gene3D Cysteine proteinases 10 171 - -
Ssu3g2030 222 Pfam Cathepsin propeptide inhibitor domain (I29) 26 83 IPR013201 -
Ssu3g2030 222 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 18 159 - -
Ssu3g2030 222 SUPERFAMILY Cysteine proteinases 25 156 IPR038765 -
Ssu3g2030 222 PANTHER SENESCENCE-ASSOCIATED GENE 12 18 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2030 Ssu-Chr3 67167189 67170504 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2030 - - gmx:113001896 266.159