Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1370 ATGGCTGACACTTCTTTTTTCTTTACTAACTTTCCTAAACACTTTCGGGAGAGAGACTTATGGAGGGTTTTTCAAAGGTGGGGAAGGGTGCTGGATGTTTTCGTCTCAAGAAAGCTCAATGCAAGGAACCGAAAGTTTGGGTTTGTAAGGTTTCAGGGAGTGAACGATGTTGTCTCTCTGGAAAGAGAGTTGGATGAAATTTGGATTGATACTTGGAAGTTGCAGGTGAATCTTCTAAAGTACCAGAGGATGGAGGTTCCAAGGGTGCAGAGAAATGAGGGTCCTAAGTTCAGTTGGTCGCCAAGGAAGAGAGTGACGCAGTCTAGGGCAGTCTGGAATCGGGATCGGACGGAGCAGCCGTCGTTTGCTCAAGTGGTATCGTGGGAGGTAGCACAAAGTGGGACCGACGGGAACGTAGGAGGTGCACAGGGGGAAGAGGTTACCAAGCTTACAGTGGTTTTAGAGCAGCCTTCCTGGCTTGAAGGGAGCTACGTTGGTTGCCTTAAGGAGGTGCCATGCATGCAGTCGATGAAAGAGAGCTTTGTGATGGGAGGCTTCAGTCATGTCAGAATAGGGTATCTTGGGGAAAGGTTGAGCAAGATCATAGCTGATAATAAAGCCTGGTTTGACGAAGTTTTCTTATCGGTCATACCATGGGATGATTCTTTTGCAGTGAAGGATAGATTGGTGTGGTTACGATGTAGAGGCATCCCGCTTCAAATGTGGTGCAATCAGTGCTTTACCAGAGTAAGGGCCTCGGTGGGGGAGGTGGTGGAGATTGACGAAGCAATAGAGAAGAAAGAAAAGTCGGAATACACGCATTTTCGGGTAAAAATCCCGGTTAACAGTGTAGTCAGCGTGGTGAAGGATTTCAGTATCAATGGAGTTTTGTGTACGGTGTCGCTAGAAGAAGAGGCGTGCATCCCGGACATATCTTTCAAGAATTTCTGCAGCAAATGGGATGGAGGGGGTTCTAAGGTGGATACTGAGGCAAGTTCAGAGGAGGGAAGCTTAGGAGCAAGCCTCTGCGACTCAGCAGATTCGAAGATTGAAGTGGGCGGAGGTGGGAGAGTAGGCAACGAAGGAGGTGGAGGAATGGATGTCGTCGGAGATGGAGGCGCGGGGAACGAAGGGTTGGCCTTGGGCAGACGGGACTCATTACTCCTCGGTAAGATGAGCAAGCAA 1185 0.4911 MADTSFFFTNFPKHFRERDLWRVFQRWGRVLDVFVSRKLNARNRKFGFVRFQGVNDVVSLERELDEIWIDTWKLQVNLLKYQRMEVPRVQRNEGPKFSWSPRKRVTQSRAVWNRDRTEQPSFAQVVSWEVAQSGTDGNVGGAQGEEVTKLTVVLEQPSWLEGSYVGCLKEVPCMQSMKESFVMGGFSHVRIGYLGERLSKIIADNKAWFDEVFLSVIPWDDSFAVKDRLVWLRCRGIPLQMWCNQCFTRVRASVGEVVEIDEAIEKKEKSEYTHFRVKIPVNSVVSVVKDFSINGVLCTVSLEEEACIPDISFKNFCSKWDGGGSKVDTEASSEEGSLGASLCDSADSKIEVGGGGRVGNEGGGGMDVVGDGGAGNEGLALGRRDSLLLGKMSKQ 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1370 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 81 IPR000504 GO:0003723
Pvu11g1370 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 57 IPR000504 GO:0003723
Pvu11g1370 395 SUPERFAMILY RNA-binding domain, RBD 5 92 IPR035979 GO:0003676
Pvu11g1370 395 CDD RRM_SF 7 77 - -
Pvu11g1370 395 Pfam Domain of unknown function (DUF4283) 198 277 IPR025558 -
Pvu11g1370 395 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 316 - -
Pvu11g1370 395 SMART rrm1_1 5 77 IPR000504 GO:0003723
Pvu11g1370 395 Gene3D - 1 86 IPR012677 -
Pvu11g1370 395 PANTHER RNA RECOGNITION MOTIF 5 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1370 Pvu-Chr11 29815774 29816991 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1370 - - pvu:PHAVU_011G132400g 753.051